Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1236 ATGGATTTCGCCCGGACCAGTTTGCTGACCACTCTCGTTGTCTTCCAGAACACCATTAAAGAAGAGTTGATCAGGAGCGTGCATGTCTACCGATTAAGGGATGGAAAAGAGAGTGAAGTTGAAAGAGAGTTTTTGTTTTCACGGAGTGGCTCATACGGGGAAATGTGGGCTACCCCAATTCTTAGATTACAGAATTTTCGTGTTTCAGAAGTTTCTGAAGGGTATCAGAATGGAGTGTGGCTTTGTGTCTTTGCGTTTCACGCCGATCACAAGCCTCAATTTTCCCGTATTCCTCCATTATTATCAGTCACGAGAAATCCCAAGCTTCAGATGATCTCAACATTACTTATTGATCTCCATATGATATATGAGTTGGACTGCAAATTGAAAGAGAAAGATATTCAGAAAATCTCCCCAGACACAGGATGCCAAGGAAATGGCAATGATCACCATCCATCAAGAAAAATCTTGCTCCCAGATCTCAATTGTCTTCCTTATCCAGATGACATGCCTGAGTTACAGGACAATGAGCTAGATGATGAAAGTTTAGACATGTCTGAGTTGCCTGAGAATGAGCCAGATGATGACAGTTCAAACATGCCTGAGTTACCTGAGAACAAGCCAGATGACGAAAGTTCAGACATGCCTGAGTTACCAGACAATGAGCTAGTTGACAAAAGCTTACCAGGTTCAGTTTCAGTGCTATTCATAGCTTTTGTTGTTTCCCTCTTCCAAAGGATGTCTATTATGAAAGTGGATCCTGTTTATTACACTGTTCAGTTGTTTCCAATTTTAAATGTTGTTAACCACCTTGTTCCAGAAGAAGCATCAAGAAATCTAAAAGTTGGACTTACAGTACTCAAGAGGAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATTAAATCGCTTGACAATCTCATTCATGATCTCCAGTACGCATTTGTGGAACACTTGCTGATTTACAAAGAAAAGCACCTACAGGAAGTGGCAGAACATGAAGAACCAGAGGACAATGCTGCAACCATGGCAGTGACAAAGAGGCAAAAGATGCTGGAGAGTGAAAAAGAAAATATTGAGAGGAAACCCTCCGTGGACATACAAAGAGAAACTAAGAGATTCAGGCAGGATGTCTTCAAGAGAAGGCATAGAGCTAGAGCTCTGACAAGACAGAGTTCTGCTGCCTCCAGCACTTAG 1206 0.4212 MDFARTSLLTTLVVFQNTIKEELIRSVHVYRLRDGKESEVEREFLFSRSGSYGEMWATPILRLQNFRVSEVSEGYQNGVWLCVFAFHADHKPQFSRIPPLLSVTRNPKLQMISTLLIDLHMIYELDCKLKEKDIQKISPDTGCQGNGNDHHPSRKILLPDLNCLPYPDDMPELQDNELDDESLDMSELPENEPDDDSSNMPELPENKPDDESSDMPELPDNELVDKSLPGSVSVLFIAFVVSLFQRMSIMKVDPVYYTVQLFPILNVVNHLVPEEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLQYAFVEHLLIYKEKHLQEVAEHEEPEDNAATMAVTKRQKMLESEKENIERKPSVDIQRETKRFRQDVFKRRHRARALTRQSSAASST 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1236 401 MobiDBLite consensus disorder prediction 381 401 - -
Glsi05g1236 401 MobiDBLite consensus disorder prediction 200 214 - -
Glsi05g1236 401 ProSiteProfiles RWP-RK domain profile. 240 328 IPR003035 -
Glsi05g1236 401 MobiDBLite consensus disorder prediction 184 199 - -
Glsi05g1236 401 Pfam RWP-RK domain 271 307 IPR003035 -
Glsi05g1236 401 PANTHER PROTEIN RKD4 275 399 IPR044607 GO:0003700
Glsi05g1236 401 MobiDBLite consensus disorder prediction 184 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1236 Glsi-ChrGlsi05 61856914 61861702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1236 19 401 AtRKD Transcription Factor Family AT4G35590 37.306 2.82e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi05g1236 RWP-RK 3e-15 No_clan