Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1231 ATGTGGACGAAGATGTGTGGGAATAACGGTTTGGAGGAGTGGCTCTACTTTCTTGAAGAAATCTATGAAGATGTGGAACGCAAAAGCAAACAAGATGAAAGTGGAATGCATAAGCAATGTGGGACAAAGATGTGTGGGAAGAACGATTTGGAGGAGATCACCATGCCTAAAGCAAAAGCTGACGCTAAAGCTACCGATAGTCGTCTGAAGCGCAAGGGCGCTGGAGCCGGAAGGAAACAGTCGAAGAAAGCTGCTAAGGATCCAAACAAACCGAAAAGACCTCCGAGTGCTTTCTTCGTTTTTATGGCTGAGTTCAGAGAGCAGTTTAAAAAAGAGCATCCAAACAACAAATCTGTCGCTGTTGTCGGTAAAGCTGGAGGTGATAAATGGAAATCGTTGTCTGATGCTGAAAAAGCTCCCTACATAGCTAAGGCTGAGAAGAAGAAAGAAGAATACGATAGAACTATTCAGGCCTACAATAAGAGATTGGCTGAGGGGAAAAATCCTTCAGAGGAAGAAGAGTCAGACAAGTCAAGGTCTGAAGTGAATGATGATGATGAGGACGAGGAGGAAGACGATGATGAGTAA 588 0.4405 MWTKMCGNNGLEEWLYFLEEIYEDVERKSKQDESGMHKQCGTKMCGKNDLEEITMPKAKADAKATDSRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMAEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEKAPYIAKAEKKKEEYDRTIQAYNKRLAEGKNPSEEEESDKSRSEVNDDDEDEEEDDDE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1231 195 CDD HMG-box_AtHMGB1-like 92 152 - -
Glsi05g1231 195 MobiDBLite consensus disorder prediction 27 98 - -
Glsi05g1231 195 MobiDBLite consensus disorder prediction 178 195 - -
Glsi05g1231 195 MobiDBLite consensus disorder prediction 110 195 - -
Glsi05g1231 195 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 91 160 IPR009071 -
Glsi05g1231 195 MobiDBLite consensus disorder prediction 50 73 - -
Glsi05g1231 195 SUPERFAMILY HMG-box 79 162 IPR036910 -
Glsi05g1231 195 Gene3D High mobility group box domain 75 178 IPR036910 -
Glsi05g1231 195 MobiDBLite consensus disorder prediction 130 177 - -
Glsi05g1231 195 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 58 193 IPR031061 -
Glsi05g1231 195 Coils Coil 142 162 - -
Glsi05g1231 195 SMART hmgende2 90 161 IPR009071 -
Glsi05g1231 195 Pfam HMG (high mobility group) box 91 160 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1231 Glsi-ChrGlsi05 61836299 61839469 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi05g1231 HMG_box 1.8e-23 CL0114