Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1224 ATGTCGTGCTCGTCGTCATCAGGGTCGGAGGAAGATGATGAGGGCTTCGATTCCTACAGGAAAGGAGGCTACCATGCCGTCAGGGTCGGCGATCAGTTCGCCGGCGGTAGGTACATAACCCAGAGGAAGCTGGGCTGGGGTCAGTTCTCAACTGTGTGGCTTGCTTACGATACTCGCACCTCTACATATGTTGCTCTTAAGATCCAGAAAAGTGCAGCCCAGTTTGCTCAGGCTGCCCTTCATGAAATCAATATTCTTTCCTCCATTGCTGATGGAGACCCTTCAAATTCAAAGTGTGTTGTCCATTTGATTGACCACTTCAAGCATACAGGTCCAAATGGGCAGCACCTTTGTATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTCTGATCAGATATAACCGTTACAGAGGCCTTCCATTGAATAAAGTTAGGGAGATTTGCAAATGCATTTTGGTTGGTCTTGATTACTTGCATAGAGAAGTTGGCATAATTCACACTGATCTAAAACCTGAAAATATTCTTCTCTTTACCACTATTGATGCTGCCAAAGACCCTGTTAGATCTGGACTTTCCCCAATCCTGGAGAGGCCTGAGGGAAACTCAATCGGTGGTTTTAGTAGTCTTATTGAGAAAAAGTTAAAAAGGAGGGCAAGAAGAGCAGTTGCCAAGATATCAGAAAAACGTGCTTCAATGGGAGGAACAGGAGAAGTTCCAAAGTCTGATAGAAAAGTTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATCCAGACAAGGCAGTACAGAGCTCCTGAAGTAATACTCCAGACTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCATGTACTGCTTTTGAGCTTGCCACTGGTGATATGATGTTTACCCCTAAGAGTGGACAAGGCTTTAGTGAGGATGAGGATCACCTTGCCATGATGATGGAACTCCTTGGGAAAATGCCCCGGAAAGTTGCTATTAGCGGAGCTAAATCCAAGGATTTCTTTGACAGACATGGGGATCTAAAACGGATTCGGAGGCTAAAATTCTTGTCTGTTGACAAATTGTTGATTGATAGATACAAATTTTCGGAGGATGACGCCAGGAAGTTTTCAGAGTTTCTTTCACCTCTTCTTGATTTTACACCAGAGAACCGGCCAACTGCACAGCAGTGCTTACAACACCCATGGTTCAATGGCGAGGAGTCAACACCAAATGAGAAGAGAAATGAATCTAGTGTGGAAAAGGTTGGCGTTGGGATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1338 0.4439 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYITQRKLGWGQFSTVWLAYDTRTSTYVALKIQKSAAQFAQAALHEINILSSIADGDPSNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYRGLPLNKVREICKCILVGLDYLHREVGIIHTDLKPENILLFTTIDAAKDPVRSGLSPILERPEGNSIGGFSSLIEKKLKRRARRAVAKISEKRASMGGTGEVPKSDRKVDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQTGYSFSVDMWSFACTAFELATGDMMFTPKSGQGFSEDEDHLAMMMELLGKMPRKVAISGAKSKDFFDRHGDLKRIRRLKFLSVDKLLIDRYKFSEDDARKFSEFLSPLLDFTPENRPTAQQCLQHPWFNGEESTPNEKRNESSVEKVGVGMSNLKIKVGK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1224 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1224 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Glsi05g1224 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1224 445 CDD STKc_SRPK 27 413 - -
Glsi05g1224 445 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Glsi05g1224 445 Pfam Protein kinase domain 38 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1224 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1224 445 SUPERFAMILY Protein kinase-like (PK-like) 32 420 IPR011009 -
Glsi05g1224 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Glsi05g1224 445 FunFam Protein kinase superfamily protein 24 123 - -
Glsi05g1224 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 224 - -
Glsi05g1224 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Glsi05g1224 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Glsi05g1224 445 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1224 Glsi-ChrGlsi05 61761579 61765735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1224 4 414 EF-hand Containing Proteins AT5G22840 50.759 2.75e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Glsi05g1224 Pkinase 1.8e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1224 05 61761579 61765735 Glsi09g0726 09 4975005 4977918 CCT
Glsi05g1224 05 61761579 61765735 Glsi05g1224 05 61761579 61765735 ECH