Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1219 ATGATGGGAAAGGGGTATGTGTGGATAGCCACTGATTGGCTTTCAACTATTCTGGACACAGACCCTTCCCTGTCCATGAATGACATCCAAGGAGTTCTTGCCCTACGCATGCACACCCCGGATTCAGAAGCCAAAAGGGGTTTTATTTCTAGATGGATTAATTTAACCAGGCAAAAATCTTCTGGTAAGGGTCCTTTTGGGTTGAACGTTTATGGCTTATATGCTTATGACACAGTTTGGGTTCTTGCTTATGCACTTGATGCATATTTTAACAGTGGAGGATCTTTGTCATTTCCAAATGATGCAACTCTGAACATGTTAAGGGTCAATAGCCAGCATCTGGGTACTATAGGGGTCTTTGGTAATGGTAGTGGGTTGCTTCAAAACATTTTTGGGGTGAATAGACCTGGTTTAACAGGCCAAATGATGTTTAGTTCAGATGGGAACCTTATGCATCCTGCATATGAAGTCATTAATGTGATTGGCACTGGGATTAGGAGGATTGGTTATTGGTCCAATTCCTTTGGTCTCCACACTGGGGAAGCACCTAATCATAGTGGAGGACTAGATGGTGTCATATGGCCTGGTCAGACAAATCAAACACCTAGAGGTTGGGTTTTCGCCAGCAATGGAAGGCCTCTGAGAGTTGGGGTGCCACTTAGAATTAGCTACCATGAATTTGTATCAAGAGCTGAAGGCTCTGAGATGTTTGGTGGCTTCTGCATAGATGTGTTTACTGCTGCACTGAAGCTATTGTCTTATACAGTTCCATACAAGTTTATTCCATTTGGAGATGGTAGAACCAACCCATTGAACTCAGAGCTTCTGCACATGATCACAACTGGTGTCTTTGATGCTGTGGTAGGCGACATTACCATTACCACAAACAGAACAAAGATAGTGGATTTTACACAGCCATATATCGAGTCTGGGCTGGTTGTTGTGGCTCCTATTAGGAAGTTGTACTCTAGTGCTTGGGCCTTCCTGAGACCATTTACTCCATGGATGTGGCTCGTGACGAGCCTGTCTTTCTTTGTTGTGGGAGCAGTTGTGTGGATTCTAGAGCGTCGCATAAACGATGACTTTAGGGGCCCTCCTAGAAGGCAGTTTGTCACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATAAAGAGAAAACTGCAAGCACCCTTGGTCGCTTAGTGCTAATCATATGGCTATTTGTTGTTTTAATACTGAACTCGAGCTATATTGCAAGCCTGACCTCCATCCTCACGGTGGAACAGCTGTCTTCTCCAGTGAAGGGGATTGAGAGCTTGGTGACAAGCAACGATCGAATTGGTTACCTGAGGGGTTCATTTGCTGTGAATTATCTAACGGAGGAGCTCAACATACAGAGATCCAGGCTGGTTCCTCTGAACACGCCATCAGAATTTGAAAAAGCCCTAGAGGATGGCCCTGCTAATGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTATCAACCAGATGTGAATTTGGTATAGTTGGTCAAGAATTCACCAAAATGGGATGGGGCTTCGCCTTCCCAAGGGACTCTCCCCTAGCAATTGAAATATCAACTGCTATCCTAAAACTGTCAGAGACTGGAGATCTCCAGAAAATTCATGACGAGTGGCTTACAAGAACTGCTTGCAGCTCAGAGGGTGCAAAGCAAGGCATACACAGACTTGAGCTGAAAAGTTTTTGGGGGCTATTCCTTTTATGTGGGATAGTATGCTTTATTTCTCTCCTTTGTTATGGTATTCGAATGGCTTACCGTTTCAGCAGGCACGCCAATTATAATGGTAACCTTGAGGGGTCATCATACTCGGCTCGTCTTCGCTCGTTTATTTCCTTTATCAATGAGAAAGAAGAGGAAGACAAAAACAGATTGAAGAGAAGACGAAAGGATAGGGGCAATTGCAGTGAAGATGGATCAATATATGGCTCAAATATTAGTGTCCAAGTTCAAAATGATGCCAAGGCTAACTAG 2016 0.4385 MMGKGYVWIATDWLSTILDTDPSLSMNDIQGVLALRMHTPDSEAKRGFISRWINLTRQKSSGKGPFGLNVYGLYAYDTVWVLAYALDAYFNSGGSLSFPNDATLNMLRVNSQHLGTIGVFGNGSGLLQNIFGVNRPGLTGQMMFSSDGNLMHPAYEVINVIGTGIRRIGYWSNSFGLHTGEAPNHSGGLDGVIWPGQTNQTPRGWVFASNGRPLRVGVPLRISYHEFVSRAEGSEMFGGFCIDVFTAALKLLSYTVPYKFIPFGDGRTNPLNSELLHMITTGVFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLYSSAWAFLRPFTPWMWLVTSLSFFVVGAVVWILERRINDDFRGPPRRQFVTIIWFSFSTLFFSHKEKTASTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSNDRIGYLRGSFAVNYLTEELNIQRSRLVPLNTPSEFEKALEDGPANGGVAAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFAFPRDSPLAIEISTAILKLSETGDLQKIHDEWLTRTACSSEGAKQGIHRLELKSFWGLFLLCGIVCFISLLCYGIRMAYRFSRHANYNGNLEGSSYSARLRSFISFINEKEEEDKNRLKRRRKDRGNCSEDGSIYGSNISVQVQNDAKAN 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1219 671 SMART GluR_14 215 556 IPR001320 GO:0015276|GO:0016020
Glsi05g1219 671 FunFam Glutamate receptor 209 325 - -
Glsi05g1219 671 Pfam Receptor family ligand binding region 1 162 IPR001828 -
Glsi05g1219 671 SUPERFAMILY Periplasmic binding protein-like I 1 205 IPR028082 -
Glsi05g1219 671 Gene3D - 208 325 - -
Glsi05g1219 671 SUPERFAMILY Periplasmic binding protein-like II 192 555 - -
Glsi05g1219 671 MobiDBLite consensus disorder prediction 636 650 - -
Glsi05g1219 671 CDD GluR_Plant 212 554 - -
Glsi05g1219 671 Gene3D - 326 464 - -
Glsi05g1219 671 FunFam Glutamate receptor 325 455 - -
Glsi05g1219 671 Pfam Bacterial extracellular solute-binding proteins, family 3 225 555 IPR001638 -
Glsi05g1219 671 Pfam Ligand-gated ion channel 556 586 IPR001320 GO:0015276|GO:0016020
Glsi05g1219 671 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 632 IPR015683 -
Glsi05g1219 671 FunFam Glutamate receptor 451 558 - -
Glsi05g1219 671 Gene3D - 1 177 - -
Glsi05g1219 671 MobiDBLite consensus disorder prediction 636 656 - -
Glsi05g1219 671 Gene3D - 478 561 - -
Glsi05g1219 671 Gene3D - 37 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1219 Glsi-ChrGlsi05 61744181 61747821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1219 1 659 Ion Channels AT3G51480 58.098 0.0 780