Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi05g1218 | ATGCGACCATTTCTTTCCCATAATACTCTCTCTCTTGAAATCCCACGTCTTTGCCGCCCATCTCTTCACAAATGGCGTCTCTCCTTCTTGTTATTGTCTGTTCCATGCCCAGATCCTAGAGTGGAGGTTCCCACGGTTTCCCAGAATGTTTACAATCTTGCTCTGCTTCTCCTCTCCGTCCTCTCTTCCTGTGGAGCTGATGGCGACTGGTTAAAAGTTGATCTTTGCGTCTTTTGGCTTGTGGTGTTAATGGTTCTCTGCAACGAGTTCTCTTCAACTGGGGCTGGCGTGACTACGGTACCCGATTCTGTAAATATTGGGGTTCTCTACTCTTTCAACACCACCGTTGGTAGAATTGTAAAAATTGCCATAGAAGCAGCAATTGAAGACGTAAATTCGGATCCATCTATTCTTGGTAAAACTAAGCTGAAAGTCTCAATGCAAGAGGATTCCAAATACAGAGGTTTTTTGAGCATTTCTGAGGCCTTGAATCTCATGGCGAGACGCACTGTGGCTATAATTGGTCCCCAAACCTCTATAACAGCTCATGTCATATCTCATATTGCAAACGAACTCCAAGTTCCTCTGGTATCATTTTCAGCAACGGACCCCACCCTTTCTTCACTTCAATTCCCCTTCTTCGTTAGAACTTCTTATAATGATCTTTACCAGATGACTGCAATAGCAGAACTCGTTGATTACTATGGGTGGAGAGAGGTTATTGCAGTCTATGTTGATGATGATCATGGGAGAAATGGGATTGGTGCATTAGGGGATAAGCTTGCTGAGAGACGTTGTAAGATCTCTTATAAAGCACCTTTGAGCCCTGAAGCAACTCGGGAGGAGATTACTGATGTGCTTGTTCAGGTCGCTTTGGCGGAATCTCGGATTATAGTTCTGCACACTAATGCTGCTTGGGGGCCTCAGGTGTTTAGTGTGGCAAAGTATCTTGGGATGATGGCAAGTGGGTATGTTTGGATAGCCACTAATTTTCTCTCTACTCTGCTGGATACAGATGGTCCACTCTCTTCAGATAAAATGGATGAAATTCAAGGAGTTCTTACGCTACGTATCTACACGCCAGATTCAGAACTCAAAAGAAGATTTGTTTCAAGGTGGAAAAACTTGACTAGAGGGAAGGCTGCTAATAGTCACCTTGGATTGAGTACTTTTGGTCTCTTTGCATATGATACTGTTTATGTGCTTGCTCGTGCACTTGATAGTTTTTTCAAACAAGGGAACCGAATCACATTCTCATATGACTCAAAGTTATCTGAACTACGTGGGAACAGTTTGCATCTTGATGCTGTGAACATCTTTGATGAAGGAAACTTGTTGAGGAACAGCATATACAAGGTTAACATGACTGGTGTAACAGGTACAATCAAGTATACATCTGATGGAAACCTTGTTAATCCAGCATATGAAATCCTCAATGTGATTGGAACAGGATATCGGAGGATTGGTTATTGGACTAATTACACTGGATTATCCGTTGTTCGCCCAGAAGAACTTTATTCAAAACCACCCAATCGTTCCAGTATAAATCAAAAGCTAAACCCAGTGATTTGGCCAGGGGATACAACCCAGAAGCCTCGTGGTTGGGTTTTTCCAAACCGTGGAAGGCTCTTAAGAATTGGAGTACCAAGCAGAGTTAGTTACCGTGAGTTTGTCTCACATGTACAAGGCTCTGACATGTTCAAGGGGTTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCTTATGCGGTCCCTTATAAATTCATTTCATTTGGGGATGGTCACAGCAATCCTGATAACACTGAGCTTGTTCGTCTGATCGCAGCGGGTGTCTTTGATGCTGCTGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTCGATTTTACTCAGCCATTCATTGGGTCTGGCCTGGTAGTAGTAGCTCCAATTAGGAAGTTGGAATCTAATGCTTGGGCCTTTTTGAGGCCATTTACTCCAACGATGTGGAGTATCACAGCAATCTTTTTCCTAGCAATCGGAGCTGTTGTTTGGATTTTGGAGCATAGGCTTAATGATGAATTCCGAGGACCTCCAAGAAAACAAGTAGTTACAGTTTTGTGGTTCAGTTTTTCAACTATGTTTTTTGCCCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTACTTTTATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCAAACCTGACCTCAATCCTCACAGTGCAAAAGCTATCTTCACCCATTAAAGGCATTGAAACTTTGGTTACTAGCAAAGACCCTATTGGCTACCTGCAGGGTTCTTTTACTAGAAATTATCTATTAGAAGAAGTTGGTATAGATGAATCCAGACTTGTTCCTCTAAAGACACCAGAAGACACTGCTAAAGCATTGGAAGATGGTCCCAAAAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCCTACACAGAGCTCTTCCTTTCTAGCCGATGTGAATTGACTGTGGTAGGTCAAGAGTTTACCAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCCTTTGGCGGTTGACATGTCGACTGCCATATTGGAATTGGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTCTGAATCTTGCATGCCTATCACAAAATGCAAAGCTTGAAGTGGACAGACTTAACCTCAAAAGCTTTTGGGGCCTCTATCTCGTCTGTGGGTTAGCTTGCTTGGTTACCATCTTCATCTATCTCATACTAATGATGAGGCAGTACAAAAAGCACTACTCGGAGGAAGTTGAGTCTTCTGGCCGAAGCGTAGGATCTTCTTCACGTATTCGGACCTTCCTTTCATTTGCAGACGAAAAGGAATCGGAAGTTAAGAGCCGCTCCAAGAGAAGGCAACTGGAGAGGCTCTCATACGGAAGCACAAATGACGGAGGATCAGTCATCAGCTCCAATAATCAATATCCTCAACCATCCTTTAACAGAAGCGTTCATTTTGCGGACGAAGCCTGA | 3039 | 0.4307 | MRPFLSHNTLSLEIPRLCRPSLHKWRLSFLLLSVPCPDPRVEVPTVSQNVYNLALLLLSVLSSCGADGDWLKVDLCVFWLVVLMVLCNEFSSTGAGVTTVPDSVNIGVLYSFNTTVGRIVKIAIEAAIEDVNSDPSILGKTKLKVSMQEDSKYRGFLSISEALNLMARRTVAIIGPQTSITAHVISHIANELQVPLVSFSATDPTLSSLQFPFFVRTSYNDLYQMTAIAELVDYYGWREVIAVYVDDDHGRNGIGALGDKLAERRCKISYKAPLSPEATREEITDVLVQVALAESRIIVLHTNAAWGPQVFSVAKYLGMMASGYVWIATNFLSTLLDTDGPLSSDKMDEIQGVLTLRIYTPDSELKRRFVSRWKNLTRGKAANSHLGLSTFGLFAYDTVYVLARALDSFFKQGNRITFSYDSKLSELRGNSLHLDAVNIFDEGNLLRNSIYKVNMTGVTGTIKYTSDGNLVNPAYEILNVIGTGYRRIGYWTNYTGLSVVRPEELYSKPPNRSSINQKLNPVIWPGDTTQKPRGWVFPNRGRLLRIGVPSRVSYREFVSHVQGSDMFKGFCIDVFLSAVNLLPYAVPYKFISFGDGHSNPDNTELVRLIAAGVFDAAVGDITITTERTKMVDFTQPFIGSGLVVVAPIRKLESNAWAFLRPFTPTMWSITAIFFLAIGAVVWILEHRLNDEFRGPPRKQVVTVLWFSFSTMFFAHRENTVSTLGRFVLLLWLFVVLIINSSYTANLTSILTVQKLSSPIKGIETLVTSKDPIGYLQGSFTRNYLLEEVGIDESRLVPLKTPEDTAKALEDGPKKGGVAAYVDERAYTELFLSSRCELTVVGQEFTRNGWGFAFPRDSPLAVDMSTAILELAENGDLQRIHDKWLLNLACLSQNAKLEVDRLNLKSFWGLYLVCGLACLVTIFIYLILMMRQYKKHYSEEVESSGRSVGSSSRIRTFLSFADEKESEVKSRSKRRQLERLSYGSTNDGGSVISSNNQYPQPSFNRSVHFADEA | 1012 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi05g1218 | 1012 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 601 | 884 | IPR001638 | - | |
Glsi05g1218 | 1012 | MobiDBLite | consensus disorder prediction | 980 | 1003 | - | - | |
Glsi05g1218 | 1012 | Gene3D | - | 854 | 884 | - | - | |
Glsi05g1218 | 1012 | SUPERFAMILY | Periplasmic binding protein-like I | 100 | 536 | IPR028082 | - | |
Glsi05g1218 | 1012 | FunFam | Glutamate receptor | 781 | 888 | - | - | |
Glsi05g1218 | 1012 | Pfam | Receptor family ligand binding region | 121 | 482 | IPR001828 | - | |
Glsi05g1218 | 1012 | Gene3D | - | 220 | 497 | - | - | |
Glsi05g1218 | 1012 | MobiDBLite | consensus disorder prediction | 965 | 979 | - | - | |
Glsi05g1218 | 1012 | CDD | GluR_Plant | 544 | 884 | - | - | |
Glsi05g1218 | 1012 | Gene3D | - | 655 | 780 | - | - | |
Glsi05g1218 | 1012 | Gene3D | - | 540 | 654 | - | - | |
Glsi05g1218 | 1012 | FunFam | Glutamate receptor | 539 | 655 | - | - | |
Glsi05g1218 | 1012 | FunFam | Glutamate receptor | 220 | 376 | - | - | |
Glsi05g1218 | 1012 | PIRSF | IGluLR_plant | 72 | 1006 | IPR017103 | - | |
Glsi05g1218 | 1012 | MobiDBLite | consensus disorder prediction | 965 | 1004 | - | - | |
Glsi05g1218 | 1012 | CDD | PBP1_GABAb_receptor_plant | 105 | 501 | IPR044440 | - | |
Glsi05g1218 | 1012 | FunFam | Glutamate receptor | 655 | 785 | - | - | |
Glsi05g1218 | 1012 | SMART | GluR_14 | 545 | 886 | IPR001320 | GO:0015276|GO:0016020 | |
Glsi05g1218 | 1012 | Pfam | Ligand-gated ion channel | 885 | 917 | IPR001320 | GO:0015276|GO:0016020 | |
Glsi05g1218 | 1012 | Gene3D | - | 122 | 472 | - | - | |
Glsi05g1218 | 1012 | SUPERFAMILY | Periplasmic binding protein-like II | 522 | 885 | - | - | |
Glsi05g1218 | 1012 | Gene3D | - | 813 | 853 | - | - | |
Glsi05g1218 | 1012 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 104 | 960 | IPR015683 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi05g1218 | Glsi-ChrGlsi05 | 61736552 | 61741531 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi05g1218 | 79 | 980 | Ion Channels | AT3G51480 | 61.038 | 0.0 | 1174 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Glsi05g1218 | 05 | 61736552 | 61741531 | Glsi09g0730 | 09 | 4996414 | 5001153 | CCT | |
Glsi05g1218 | 05 | 61736552 | 61741531 | Glsi05g1218 | 05 | 61736552 | 61741531 | ECH | |
Glsi09g0730 | 09 | 4996414 | 5001153 | Glsi05g1218 | 05 | 61736552 | 61741531 | ECH |