Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1218 ATGCGACCATTTCTTTCCCATAATACTCTCTCTCTTGAAATCCCACGTCTTTGCCGCCCATCTCTTCACAAATGGCGTCTCTCCTTCTTGTTATTGTCTGTTCCATGCCCAGATCCTAGAGTGGAGGTTCCCACGGTTTCCCAGAATGTTTACAATCTTGCTCTGCTTCTCCTCTCCGTCCTCTCTTCCTGTGGAGCTGATGGCGACTGGTTAAAAGTTGATCTTTGCGTCTTTTGGCTTGTGGTGTTAATGGTTCTCTGCAACGAGTTCTCTTCAACTGGGGCTGGCGTGACTACGGTACCCGATTCTGTAAATATTGGGGTTCTCTACTCTTTCAACACCACCGTTGGTAGAATTGTAAAAATTGCCATAGAAGCAGCAATTGAAGACGTAAATTCGGATCCATCTATTCTTGGTAAAACTAAGCTGAAAGTCTCAATGCAAGAGGATTCCAAATACAGAGGTTTTTTGAGCATTTCTGAGGCCTTGAATCTCATGGCGAGACGCACTGTGGCTATAATTGGTCCCCAAACCTCTATAACAGCTCATGTCATATCTCATATTGCAAACGAACTCCAAGTTCCTCTGGTATCATTTTCAGCAACGGACCCCACCCTTTCTTCACTTCAATTCCCCTTCTTCGTTAGAACTTCTTATAATGATCTTTACCAGATGACTGCAATAGCAGAACTCGTTGATTACTATGGGTGGAGAGAGGTTATTGCAGTCTATGTTGATGATGATCATGGGAGAAATGGGATTGGTGCATTAGGGGATAAGCTTGCTGAGAGACGTTGTAAGATCTCTTATAAAGCACCTTTGAGCCCTGAAGCAACTCGGGAGGAGATTACTGATGTGCTTGTTCAGGTCGCTTTGGCGGAATCTCGGATTATAGTTCTGCACACTAATGCTGCTTGGGGGCCTCAGGTGTTTAGTGTGGCAAAGTATCTTGGGATGATGGCAAGTGGGTATGTTTGGATAGCCACTAATTTTCTCTCTACTCTGCTGGATACAGATGGTCCACTCTCTTCAGATAAAATGGATGAAATTCAAGGAGTTCTTACGCTACGTATCTACACGCCAGATTCAGAACTCAAAAGAAGATTTGTTTCAAGGTGGAAAAACTTGACTAGAGGGAAGGCTGCTAATAGTCACCTTGGATTGAGTACTTTTGGTCTCTTTGCATATGATACTGTTTATGTGCTTGCTCGTGCACTTGATAGTTTTTTCAAACAAGGGAACCGAATCACATTCTCATATGACTCAAAGTTATCTGAACTACGTGGGAACAGTTTGCATCTTGATGCTGTGAACATCTTTGATGAAGGAAACTTGTTGAGGAACAGCATATACAAGGTTAACATGACTGGTGTAACAGGTACAATCAAGTATACATCTGATGGAAACCTTGTTAATCCAGCATATGAAATCCTCAATGTGATTGGAACAGGATATCGGAGGATTGGTTATTGGACTAATTACACTGGATTATCCGTTGTTCGCCCAGAAGAACTTTATTCAAAACCACCCAATCGTTCCAGTATAAATCAAAAGCTAAACCCAGTGATTTGGCCAGGGGATACAACCCAGAAGCCTCGTGGTTGGGTTTTTCCAAACCGTGGAAGGCTCTTAAGAATTGGAGTACCAAGCAGAGTTAGTTACCGTGAGTTTGTCTCACATGTACAAGGCTCTGACATGTTCAAGGGGTTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCTTATGCGGTCCCTTATAAATTCATTTCATTTGGGGATGGTCACAGCAATCCTGATAACACTGAGCTTGTTCGTCTGATCGCAGCGGGTGTCTTTGATGCTGCTGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTCGATTTTACTCAGCCATTCATTGGGTCTGGCCTGGTAGTAGTAGCTCCAATTAGGAAGTTGGAATCTAATGCTTGGGCCTTTTTGAGGCCATTTACTCCAACGATGTGGAGTATCACAGCAATCTTTTTCCTAGCAATCGGAGCTGTTGTTTGGATTTTGGAGCATAGGCTTAATGATGAATTCCGAGGACCTCCAAGAAAACAAGTAGTTACAGTTTTGTGGTTCAGTTTTTCAACTATGTTTTTTGCCCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTACTTTTATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCAAACCTGACCTCAATCCTCACAGTGCAAAAGCTATCTTCACCCATTAAAGGCATTGAAACTTTGGTTACTAGCAAAGACCCTATTGGCTACCTGCAGGGTTCTTTTACTAGAAATTATCTATTAGAAGAAGTTGGTATAGATGAATCCAGACTTGTTCCTCTAAAGACACCAGAAGACACTGCTAAAGCATTGGAAGATGGTCCCAAAAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCCTACACAGAGCTCTTCCTTTCTAGCCGATGTGAATTGACTGTGGTAGGTCAAGAGTTTACCAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCCTTTGGCGGTTGACATGTCGACTGCCATATTGGAATTGGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTCTGAATCTTGCATGCCTATCACAAAATGCAAAGCTTGAAGTGGACAGACTTAACCTCAAAAGCTTTTGGGGCCTCTATCTCGTCTGTGGGTTAGCTTGCTTGGTTACCATCTTCATCTATCTCATACTAATGATGAGGCAGTACAAAAAGCACTACTCGGAGGAAGTTGAGTCTTCTGGCCGAAGCGTAGGATCTTCTTCACGTATTCGGACCTTCCTTTCATTTGCAGACGAAAAGGAATCGGAAGTTAAGAGCCGCTCCAAGAGAAGGCAACTGGAGAGGCTCTCATACGGAAGCACAAATGACGGAGGATCAGTCATCAGCTCCAATAATCAATATCCTCAACCATCCTTTAACAGAAGCGTTCATTTTGCGGACGAAGCCTGA 3039 0.4307 MRPFLSHNTLSLEIPRLCRPSLHKWRLSFLLLSVPCPDPRVEVPTVSQNVYNLALLLLSVLSSCGADGDWLKVDLCVFWLVVLMVLCNEFSSTGAGVTTVPDSVNIGVLYSFNTTVGRIVKIAIEAAIEDVNSDPSILGKTKLKVSMQEDSKYRGFLSISEALNLMARRTVAIIGPQTSITAHVISHIANELQVPLVSFSATDPTLSSLQFPFFVRTSYNDLYQMTAIAELVDYYGWREVIAVYVDDDHGRNGIGALGDKLAERRCKISYKAPLSPEATREEITDVLVQVALAESRIIVLHTNAAWGPQVFSVAKYLGMMASGYVWIATNFLSTLLDTDGPLSSDKMDEIQGVLTLRIYTPDSELKRRFVSRWKNLTRGKAANSHLGLSTFGLFAYDTVYVLARALDSFFKQGNRITFSYDSKLSELRGNSLHLDAVNIFDEGNLLRNSIYKVNMTGVTGTIKYTSDGNLVNPAYEILNVIGTGYRRIGYWTNYTGLSVVRPEELYSKPPNRSSINQKLNPVIWPGDTTQKPRGWVFPNRGRLLRIGVPSRVSYREFVSHVQGSDMFKGFCIDVFLSAVNLLPYAVPYKFISFGDGHSNPDNTELVRLIAAGVFDAAVGDITITTERTKMVDFTQPFIGSGLVVVAPIRKLESNAWAFLRPFTPTMWSITAIFFLAIGAVVWILEHRLNDEFRGPPRKQVVTVLWFSFSTMFFAHRENTVSTLGRFVLLLWLFVVLIINSSYTANLTSILTVQKLSSPIKGIETLVTSKDPIGYLQGSFTRNYLLEEVGIDESRLVPLKTPEDTAKALEDGPKKGGVAAYVDERAYTELFLSSRCELTVVGQEFTRNGWGFAFPRDSPLAVDMSTAILELAENGDLQRIHDKWLLNLACLSQNAKLEVDRLNLKSFWGLYLVCGLACLVTIFIYLILMMRQYKKHYSEEVESSGRSVGSSSRIRTFLSFADEKESEVKSRSKRRQLERLSYGSTNDGGSVISSNNQYPQPSFNRSVHFADEA 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1218 1012 Pfam Bacterial extracellular solute-binding proteins, family 3 601 884 IPR001638 -
Glsi05g1218 1012 MobiDBLite consensus disorder prediction 980 1003 - -
Glsi05g1218 1012 Gene3D - 854 884 - -
Glsi05g1218 1012 SUPERFAMILY Periplasmic binding protein-like I 100 536 IPR028082 -
Glsi05g1218 1012 FunFam Glutamate receptor 781 888 - -
Glsi05g1218 1012 Pfam Receptor family ligand binding region 121 482 IPR001828 -
Glsi05g1218 1012 Gene3D - 220 497 - -
Glsi05g1218 1012 MobiDBLite consensus disorder prediction 965 979 - -
Glsi05g1218 1012 CDD GluR_Plant 544 884 - -
Glsi05g1218 1012 Gene3D - 655 780 - -
Glsi05g1218 1012 Gene3D - 540 654 - -
Glsi05g1218 1012 FunFam Glutamate receptor 539 655 - -
Glsi05g1218 1012 FunFam Glutamate receptor 220 376 - -
Glsi05g1218 1012 PIRSF IGluLR_plant 72 1006 IPR017103 -
Glsi05g1218 1012 MobiDBLite consensus disorder prediction 965 1004 - -
Glsi05g1218 1012 CDD PBP1_GABAb_receptor_plant 105 501 IPR044440 -
Glsi05g1218 1012 FunFam Glutamate receptor 655 785 - -
Glsi05g1218 1012 SMART GluR_14 545 886 IPR001320 GO:0015276|GO:0016020
Glsi05g1218 1012 Pfam Ligand-gated ion channel 885 917 IPR001320 GO:0015276|GO:0016020
Glsi05g1218 1012 Gene3D - 122 472 - -
Glsi05g1218 1012 SUPERFAMILY Periplasmic binding protein-like II 522 885 - -
Glsi05g1218 1012 Gene3D - 813 853 - -
Glsi05g1218 1012 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 104 960 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1218 Glsi-ChrGlsi05 61736552 61741531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1218 79 980 Ion Channels AT3G51480 61.038 0.0 1174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1218 05 61736552 61741531 Glsi09g0730 09 4996414 5001153 CCT
Glsi05g1218 05 61736552 61741531 Glsi05g1218 05 61736552 61741531 ECH
Glsi09g0730 09 4996414 5001153 Glsi05g1218 05 61736552 61741531 ECH