Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1217 ATGAAAAATAGATTTCTTTGTATTTCTTCTCTGTTATTAGTGCTGATCGTCTTGTTTTCGAGCTTAACCGGTGATGTGTCGAAATCACGGAGCTCTCAAGTTTCGCTGGTGGGTTATTATGACGAAGACTTCAAGGGCTTATCTCTACCAGCAAGTGGATCTCTTCCGTCTCGTCCACCTAAGCATAGAACGGCACTAATTGCTGCCCCAGATGGGACAATATATTTGGTGGATAGTGGTTCCATGCGGGTAATATGGTCATTTCCAACTGGATCACCAATTTACGGTTCATATCAAGCTCCTGTCAACAAGGATAATGATGAAGAAAATGTATCCGGAGTAGGTATTGAGTTCATAGAATGCGGAGATGACTGGGGGTTATATAGACAAAGAAAGCACTTTGGTAAAGAGAGGCTCTTAACACCTATTGCAGATGTTGTTAAAGCTACACCTAACATATCAGATGATGGAGCAGTTACACTTGGATCTAAAAGAAGCACTGTTTTTGAAGTTGATGCTAAAACTGGAAGAATCTTTCAAAGCTATGCTGCATCTGATTTTGATAACGCTTTGTTACTATGGAGTGATGACAGGCAGAGTATTCAAAATATTATCAGTACTAATAATAAGGAGCTGTTAAAGACTGATCCTCTTAAGCTAAATACACCAGAGCTGCTACTCATGATATTTAGAACAGATTATTCTCTACAAGCTGTTGGTCCTGGGTCAAAAAAAGTTTTATGGAGTATGACGGTAGCTGAATTTGAGGCTGTATTATATTGCCAACATAATGAAAATCCATCTGGTGGGGCTTCATTCAATTTGGAGGATATCTATGCTTCTGATAGTGGCTTGGATTTTGCTATGCCATACCAATGTGGAAAGAAAAAAAAAGTCTACCGCTTACCAAAAAATTTTCTGTTACAACCTTTAATCCCTGAGAGATTACCCGAGGCCAATCATGAAAATGAAATGCTCCCAATGCCTGCCTCAGATCTGATGCTTCCTTCACAGCCTAATAGTGATAGATTTTTAAATGGACATGATGATATTAGGATGCTTCCTGTGCCTGTGGCTGTGCCAAATTTTTTGCCTCTTCAGCCAAAAATGGGCTTCTATGTCAATAATGATAACACAGCTGAGCTCCCTCAACCTCCCACAGAGATTACTACACTAGGGGAAGTTGATCTAAATAGCATTATAGACTGGTCAACATCATTGCCTCTTATATTGTTTATAGTCTTTATCCTGGTCTTTTTGATATTCTACTGCACTCTACTGGTTAAAAAGCAATTTATATTGAAAGGCCAAAATAGTGAGTTTGATTTAAAATATACTCCCAAGAAGAAGAGAATGCGTAAATCAGGAAAAAACAATGGCACTGTTGACAAAAGGGATAAGCATCTATCATCAAATGAAGATGTAATGGCATGCAGCAAAACTGATAGGGAATCATGGCTGCATTTTAATAAAGTCGATGAAGGTGCCGAAGGACGCAGGGTTGGTAAACTATTTGTATCAAATAAAGAAATTGCTAAGGGAAGCAATGGTACCATTGTCTTAGAGGGAACATATGAATGCCGAGCAGTTGCTGTAAAACGCCTTGTCCAGGCTCATCATGATGAGGCATTTAAAGAAATTCAAAATCTCATTGCATCTGACCATCATCCAAACATTGTCCGATGGTACGGAGTGGAATATGATCAAGATTTTGTTTACCTTGCTTTGGAGCGTTGTACATGCAACTTAGATGATTTGATTCAGATTTACTCAGATATATCAGAAAACCCAGTGTCTAGTCAGAACCAAGCTTCCAGATGTACAATAAAGGCTCAGATGGAGATAGGAAAGGATAATATGCTAGGTCTTTGGAAAGCAAATGGCTTCCCATCACCTCTATTATTGAAGCTGATGAGGGATGTAGTTTCTGGGCTCTGTCATTTGCATGAACTGGGAATAGTACATCGGGATTTGAAACCGCAAAATATTTTGATAATTAAGGAAAGATCTTTATATGCGAAGGTTTCTGATATGGGCATTAGTAAACGCCTTCTTGAAGATATGTCTTCTTTGGGTCACAATGCTACTGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGTTCAAGGACGCCAAACACGGGCTGTAGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATAACTGGGGGAAGACATCCGTTTGGAGAACGTCTTGAACGTGATGTCAATATTGTGAAAAATCAACAGGACCTTTTCTTAGTGGATTTCATTCCTGAAGCTGAAGATCTTATTTCTTGTTTGTTAAACCCCGACCCTGATCTAAGGCCCAAGGCATTTGAAGTATTGCAACATCCTTTTTTTTGGAGTTCTGAGATGAGACTTTCATTTCTACGCGATGCCAGTGACAGAGTAGAACTGGAAGATAGGGAGACTGATTCTGATATTTTGAAGGCATTGGAAAGTATTGCACCAGTGGCGTTGGGTGCAAAGTGGGATGAAAAGATGGAACCAGTCTTTGTTGCTAACATTGGCCGTTACCGGCGATATAAATTTGATAGTGTTCGAGACTTGTTGCGAGTCATGAGAAACAAGCTGAATCACTATAGAGAATTGCCTCAAGAGATTCAGGAACTTGTAGGACCTGTTCCAGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCTAGACTCTTAATTGAAGTGTACAAAGTTATATGCCAATATTGCAAGGCAGAGGAATGTTTTCAAAGGTATTTTGAAAACGTTGAATAG 2784 0.3948 MKNRFLCISSLLLVLIVLFSSLTGDVSKSRSSQVSLVGYYDEDFKGLSLPASGSLPSRPPKHRTALIAAPDGTIYLVDSGSMRVIWSFPTGSPIYGSYQAPVNKDNDEENVSGVGIEFIECGDDWGLYRQRKHFGKERLLTPIADVVKATPNISDDGAVTLGSKRSTVFEVDAKTGRIFQSYAASDFDNALLLWSDDRQSIQNIISTNNKELLKTDPLKLNTPELLLMIFRTDYSLQAVGPGSKKVLWSMTVAEFEAVLYCQHNENPSGGASFNLEDIYASDSGLDFAMPYQCGKKKKVYRLPKNFLLQPLIPERLPEANHENEMLPMPASDLMLPSQPNSDRFLNGHDDIRMLPVPVAVPNFLPLQPKMGFYVNNDNTAELPQPPTEITTLGEVDLNSIIDWSTSLPLILFIVFILVFLIFYCTLLVKKQFILKGQNSEFDLKYTPKKKRMRKSGKNNGTVDKRDKHLSSNEDVMACSKTDRESWLHFNKVDEGAEGRRVGKLFVSNKEIAKGSNGTIVLEGTYECRAVAVKRLVQAHHDEAFKEIQNLIASDHHPNIVRWYGVEYDQDFVYLALERCTCNLDDLIQIYSDISENPVSSQNQASRCTIKAQMEIGKDNMLGLWKANGFPSPLLLKLMRDVVSGLCHLHELGIVHRDLKPQNILIIKERSLYAKVSDMGISKRLLEDMSSLGHNATGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCITGGRHPFGERLERDVNIVKNQQDLFLVDFIPEAEDLISCLLNPDPDLRPKAFEVLQHPFFWSSEMRLSFLRDASDRVELEDRETDSDILKALESIAPVALGAKWDEKMEPVFVANIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVICQYCKAEECFQRYFENVE 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1217 927 SMART PGNneu 856 910 - -
Glsi05g1217 927 PANTHER IRE1-RELATED 144 925 IPR045133 GO:0004521|GO:0004674|GO:0030968
Glsi05g1217 927 ProSiteProfiles Protein kinase domain profile. 505 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1217 927 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 497 577 - -
Glsi05g1217 927 Pfam Ribonuclease 2-5A 797 923 IPR010513 GO:0004540|GO:0006397
Glsi05g1217 927 Gene3D Phosphorylase Kinase; domain 1 491 577 - -
Glsi05g1217 927 SUPERFAMILY Protein kinase-like (PK-like) 499 806 IPR011009 -
Glsi05g1217 927 Gene3D - 59 283 IPR015943 GO:0005515
Glsi05g1217 927 ProSiteProfiles KEN domain profile. 794 925 IPR010513 GO:0004540|GO:0006397
Glsi05g1217 927 Pfam Protein kinase domain 507 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1217 927 CDD RNase_Ire1 795 923 - -
Glsi05g1217 927 SMART serkin_6 505 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1217 927 Gene3D KEN domain 794 927 IPR038357 -
Glsi05g1217 927 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 795 927 - -
Glsi05g1217 927 Gene3D Transferase(Phosphotransferase) domain 1 620 793 - -
Glsi05g1217 927 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 66 249 IPR011047 -
Glsi05g1217 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Glsi05g1217 927 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 616 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1217 Glsi-ChrGlsi05 61727429 61735215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1217 531 790 MAP Kinase Kinase Kinase AT3G06030 27.273 4.03e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Glsi05g1217 Pkinase 2.9e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1217 05 61727429 61735215 Glsi05g1217 05 61727429 61735215 ECH