Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1213 ATGACTCGAACATTAAGAATTCTCAAATCGGCCGACCACGCGGCAGCGCCGCCGCCGGAGCCCGTAGCCATGGAATCGGACTTCGTGGTGATTCTAGCGGCTCTGCTCTGTGCTCTGATTTGTGTGGTGGGGCTGATAGCCGTCGCTCGCTGCGCCTGGCTCCGACGAGGTTCCGGCGGCTCCCCAAGGCAAGCTCTGGCGAACAAGGGTCTGAAGAAGAAGGTGCTCCAATCTCTACCCAAGTTCACTTACGTGAATAGTAACCCAAACAAGTGGGTGGCTACTTCGGAGTGCGCGATTTGCTTGGCCGAGTTCGTGGAAGGCGACGAGATCCGCGTGCTGCCACAGTGCGGGCACGGGTTCCATGTGGGGTGCATAGACACGTGGCTTGGGTCCCATTCTTCGTGCCCTTCTTGTCGGCAGATTTTGGCCGTGGCCAGGTGCCAAAAGTGCGGACAGTACCCGGCGGCCAGCAGCGGAGAAGCAGGGGGAGCCACCAGTGCCGCCGTCACCGAACCGGAGTTGAAATCTAGAGAAGATGGCAATGCTGCTGCCAATTATAATAATAGCAACGGTTGTAGAGCTAACATGGAACCTCACAACCACAGATTTAATAACAATTTCTTGCCTTAA 633 0.564 MTRTLRILKSADHAAAPPPEPVAMESDFVVILAALLCALICVVGLIAVARCAWLRRGSGGSPRQALANKGLKKKVLQSLPKFTYVNSNPNKWVATSECAICLAEFVEGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQILAVARCQKCGQYPAASSGEAGGATSAAVTEPELKSREDGNAAANYNNSNGCRANMEPHNHRFNNNFLP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1213 210 SMART ring_2 98 139 IPR001841 -
Glsi05g1213 210 MobiDBLite consensus disorder prediction 155 183 - -
Glsi05g1213 210 SMART FANCL_C_2 94 148 - -
Glsi05g1213 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 145 IPR013083 -
Glsi05g1213 210 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Glsi05g1213 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 152 - -
Glsi05g1213 210 CDD RING-H2_EL5-like 97 140 - -
Glsi05g1213 210 FunFam E3 ubiquitin-protein ligase ATL6 60 146 - -
Glsi05g1213 210 Pfam Ring finger domain 97 140 IPR001841 -
Glsi05g1213 210 SUPERFAMILY RING/U-box 77 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1213 Glsi-ChrGlsi05 61699463 61700095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1213 23 151 C3H Transcription Factor Family AT1G20823 68.794 4.95e-62 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1213 05 61699463 61700095 Glsi09g0737 09 5052572 5053225 CCT
Glsi05g1213 05 61699463 61700095 Glsi05g1213 05 61699463 61700095 ECH