Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1204 ATGGTTGCAAAGAAGAAGGTGCTAGGTGGAATTGAAAGGCCTCAAGATTGGAACATAGATTCTATACTTCCGAAGAATAAAGTATGTAGTCATTCTGGGCTGCCCCAGTTTTCATTATGTCCTGCCCCAGAGTGTGTTCGTGACCGGGAGGAGTGGGGGAGATTTTTGAGAAAATGGTCAAGCAATGATGATTTCTTATGGTGTAGCATAACCATAATTGTAATGGATGCTAGACGCATTGTTGCTATTGCTGAATTTGGGCAGTGCAAATTTTACATACTGCCTCCTGCTGAGATCTCAACATCTAGCCTGGCTAGAGTTGCCTATCAGATGGACAAGGCATGCACTGTAGATAATCATTCAAGGGACCGTGAATCAGCATATATACAATGGTCAAAGTCATCTGTAGTGGATGCTTCCATAGCAGGTTCTCATCTGGCTGAGAGTCTTGGTGGATCTGATACTGTGATGGCAAGAGGTCCAACAAGTGATGGAGATTTATGCTCCCCAGATCTAAAGTTTTCTCAAGTTGAAGATTATGCTTGTCAATCTACAGCTGAACCGTGTAGCAGACCTAAATCTTATGTTGCGAAGCAGGCCTCACTTTCTGAGAAAAATTACGTACGGGTACACCCAAGTTACCTGAAAACTCTTGGTCAGGTTCATTCTGGATGGATTTTTGGTGGAATAGCTGAGCTTGTTGATAATTCAAGAGATGCCAAAGCAACTAAGATGGACATTTTTATAGATATGATGAAGTTGAAGAAATCTGGTGAGGATATTCCTGTACTGTCAGTCCTTGATGATGGACATGGAATGGAATATGAAGAAATTGTGAAAATGGTTTCTTTTGGGCATAAGCAACCTGATGGTGATGATCCAGATCGCATTGGCAGATTTGGTGTTGGATTTAAGACTGGTGCAATGAGGCTTGGCAGGGATGCTCTTGTTTTAACCCAAACTGCTAATTCCAGATGCGTAGCTTTCCTTTCACAGTCTTTGAATGAAGGTAAAGAGAATATTGAGATCCCCATAGTTAGTTACCGCCGACAAGGACAATGTATGGAAGTGGATACAAGTATTCATTCTGAAGCTTTGGCAAAATACAATTTGAAAGCCATTCAGGAATTTTCACCATTTAATAAGTATCTTATTGGTGAAAAGACGGCTTTGTTTTCTGGTGGCACAGGAACACAGATATACATTTGGAACCTGGATAAATGGGGATCAAATTATTGTCTGCAATGGCATGATGGATTGAAAGGTGGCAGCTCTTTCCACCAAGGTGATATTTTCATCCGCTCTAGAAGGATTCGATCTCGTCCTGGTCAAGTCAGTCAAAAGGTTCCATTGGATTATTCACTACGATCTTATTTAGAAGTTATCTTCTTAGTTCCACGGATGAAGATAAGCGTTCAGCATTCACAGGTTAGAAGTCAACCACTAGGAAATTTTCTTACCAATACTGTTATTGAAACTGGTTGTGTCTTGGGAAAGCAAGTTCACTTGATTCTGGGATTCAGTCAACTGGAATGGGAGCAGGCAAACTGTGGAGTATTTTTGTATTGGCATGGCCGCTTAATTGAGGCTTACAAGAGAGTTGGTGGCATGATGCATAATGCTGATGTGGGTCGGGGTGTAATTGGTGTCATAGATGTGACTGATTTAATGAATGATGGGGATGGCCGTGTCTGGGTGCATAATAACAAGCAGGGATTCCAGGACTGTGAATCATATGCACATCTAGAGGAGTGGCTTGGTAGAAAGACAGATGGATACTGCGACAATAATTTTGATTCACTTAAGTTGGACAAAGACAATTTTTTCTACAAACCAGATCATGAATGGGTTCAATGTGATAAGTGCAGAAAATGGAGGATGCTGCCTTCTGGCTTTAACATCCAAATGTTACCTTCACAATGGTTCTGTTATATGGAGCCCTTCAAAGGACAGTGTGCAGCTGCTGAACAGAAGATGCAGACTGGTGTGGTCACTGTTTCCACAAAGCGATATGGGTATGATTGCATGTCGAAAGATTCTCGTTGTAATGACATGGTGAATGTTATGGATGTTTCTAACGCTTCAGATGAGAAATTGGACGAGCCTGAGGAAATCAGATCTCCAGCTTTAAAGAGATTGAGAAAGGGACTTCCAAGGGTTAAAGTATGGCCGGTTACTAAAAACATTTCTTCTTGTCGTGGGTGCTCAATTAGGAGGCGGTATCTTCTCCAAGCACTTGGGTTCTGTGAATGGTTCCCAGCGTATAAAAGCAAGGCCAAAGGCATTGGTTCATATCATCATCTTCTTGAGAACTCAAAAATGTCATGCCCAAATCCATTTGAGGCCTCTTGTTCCAGCTCTCATCAAAATCAGAATCCTTTGCCTCCTGATGCTTCCTCTGATGCACCTGCTCCGCCTGTATCTTTTCCTCCTCTATACCACCCATTTTGTGGGTTAAATGGGGTTGGTGAATTTGAGTTCACCTCATCAGCTTGTCCGTTCGATGAGGAAGCTGGTACCAGTAGCACCACCTTCCTCTACTATCAATCACCATTTTCTCCAGTAGCTTCTCACTTTGGCACTAGTAATATTGATGGAGACTTGGGGTGCCTCTCGCCCCTTGCAGAGGCTCATGAACTCGATTCGCTTCTTCATGACCACCCATCGCCATCTGATGAAGCACTCACGCCACTTTCTGCAGTTCCATCCTTTCCAGAAGCTCATAAAATCGCTAGTGCATTGGCTACCCCATCATCCTCTGCAGGCGCCACAGTACTCGCATCGCCTCCACCACCTTCATCCCTCCCATCCTCCTCCAACCAACGGAAGCGTGGGCGGTCAAGGAGGTATTTTCCTCAGTACTCTTCCGGTGGACATAGAGTGAGAATTGTGTCCCCGGCACTGGCACAAGCATCATCATCCAAGAAAGAGGCCGAAGGACCTTCAGCAACTAAAGCGAACACGGTTCCTTCCGCCCTCATTAAGTCTAGCACAACTTTGGGTCTCGGTTCAAAATGGAATGAAATTCGACCAGCCACAATAATTGTCGAAGAAAAGGAGGATGTTGCTGAGAGAGTAATATCCTTCGCAAAAAATAATGGAGCCGTCTTCGTATTAGCAGCAACTGGTGTCATATCCTTTGTTGAGCTTCTGCGAACAGAAATAGAGGTTTCAATTTTTGAGGGAAGATTTAACATAGTGTCACTCAGCGGTACACTTCTACTCTCCAAAGGGGGTTTAAGCAAGACCGGTTACTTAACTGTGTCCCTGTCTGGAGTTGATGGTAGAGTATTTGGAGGACGAGTGCATGGCCGCTTAACTGCAGCATCCACTGTCCAGGCTCAGTTGCAGCAACACAAAAGGGAGGCGCAGGAGGCCAATCAGCGTCTTGAAACAACAATTAAGGAGCTGAGCGAAACAAGACAACAGCTGGCGACCACACAGAATCTGGTGACGCAGCTGTATCAGCGTCTGAATATGAATGTGTGA 3489 0.44 MVAKKKVLGGIERPQDWNIDSILPKNKVCSHSGLPQFSLCPAPECVRDREEWGRFLRKWSSNDDFLWCSITIIVMDARRIVAIAEFGQCKFYILPPAEISTSSLARVAYQMDKACTVDNHSRDRESAYIQWSKSSVVDASIAGSHLAESLGGSDTVMARGPTSDGDLCSPDLKFSQVEDYACQSTAEPCSRPKSYVAKQASLSEKNYVRVHPSYLKTLGQVHSGWIFGGIAELVDNSRDAKATKMDIFIDMMKLKKSGEDIPVLSVLDDGHGMEYEEIVKMVSFGHKQPDGDDPDRIGRFGVGFKTGAMRLGRDALVLTQTANSRCVAFLSQSLNEGKENIEIPIVSYRRQGQCMEVDTSIHSEALAKYNLKAIQEFSPFNKYLIGEKTALFSGGTGTQIYIWNLDKWGSNYCLQWHDGLKGGSSFHQGDIFIRSRRIRSRPGQVSQKVPLDYSLRSYLEVIFLVPRMKISVQHSQVRSQPLGNFLTNTVIETGCVLGKQVHLILGFSQLEWEQANCGVFLYWHGRLIEAYKRVGGMMHNADVGRGVIGVIDVTDLMNDGDGRVWVHNNKQGFQDCESYAHLEEWLGRKTDGYCDNNFDSLKLDKDNFFYKPDHEWVQCDKCRKWRMLPSGFNIQMLPSQWFCYMEPFKGQCAAAEQKMQTGVVTVSTKRYGYDCMSKDSRCNDMVNVMDVSNASDEKLDEPEEIRSPALKRLRKGLPRVKVWPVTKNISSCRGCSIRRRYLLQALGFCEWFPAYKSKAKGIGSYHHLLENSKMSCPNPFEASCSSSHQNQNPLPPDASSDAPAPPVSFPPLYHPFCGLNGVGEFEFTSSACPFDEEAGTSSTTFLYYQSPFSPVASHFGTSNIDGDLGCLSPLAEAHELDSLLHDHPSPSDEALTPLSAVPSFPEAHKIASALATPSSSAGATVLASPPPPSSLPSSSNQRKRGRSRRYFPQYSSGGHRVRIVSPALAQASSSKKEAEGPSATKANTVPSALIKSSTTLGLGSKWNEIRPATIIVEEKEDVAERVISFAKNNGAVFVLAATGVISFVELLRTEIEVSIFEGRFNIVSLSGTLLLSKGGLSKTGYLTVSLSGVDGRVFGGRVHGRLTAASTVQAQLQQHKREAQEANQRLETTIKELSETRQQLATTQNLVTQLYQRLNMNV 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1204 1162 Pfam CW-type Zinc Finger 615 657 IPR011124 GO:0008270
Glsi05g1204 1162 SUPERFAMILY AF0104/ALDC/Ptd012-like 1006 1117 - -
Glsi05g1204 1162 ProSiteProfiles PPC domain profile profile. 1006 1140 IPR005175 -
Glsi05g1204 1162 MobiDBLite consensus disorder prediction 921 954 - -
Glsi05g1204 1162 Coils Coil 1109 1150 - -
Glsi05g1204 1162 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 226 391 IPR036890 -
Glsi05g1204 1162 MobiDBLite consensus disorder prediction 782 804 - -
Glsi05g1204 1162 Gene3D - 604 661 - -
Glsi05g1204 1162 Pfam Morc6 ribosomal protein S5 domain 2-like 453 593 IPR041006 -
Glsi05g1204 1162 Gene3D - 203 384 IPR036890 -
Glsi05g1204 1162 CDD DUF296 1010 1113 IPR005175 -
Glsi05g1204 1162 Pfam Plants and Prokaryotes Conserved (PCC) domain 1010 1116 IPR005175 -
Glsi05g1204 1162 ProSiteProfiles Zinc finger CW-type profile. 610 660 IPR011124 GO:0008270
Glsi05g1204 1162 MobiDBLite consensus disorder prediction 782 797 - -
Glsi05g1204 1162 Gene3D - 1010 1144 - -
Glsi05g1204 1162 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 230 352 - -
Glsi05g1204 1162 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 174 1148 IPR045261 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1204 Glsi-ChrGlsi05 61601156 61635484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1204 941 1152 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 33.028 1.28e-16 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1204 05 61601156 61635484 Glsi05g1204 05 61601156 61635484 ECH