Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1196 ATGAATGTGTCAGCATCAAATTCAGATTCTTCTCCTACGATTCCTTCTTCTACGATGATCGTTACTGCCGATTCAGCAGAACCTCCTCCTCTTCCTCCGCCACATTCAGATGGTTCTGCTACCTCTCCTTTCGACTCCGACCAAAACCCACCTGCTCCATCTTCATCCTCATCTCCACCTTCGTCTTCCACCCCACCTCCAGAATTTCAAATACCCGTATCATGGCCACGGGAGGGCAAGCTCAGCCTCGATTGGATCCACAATCTCATGGCTTGCTTCGACTGGTCTTCCAAGAACCTCCCTCCCTCAGAACTCCCTTCTGTTTTGCCTGTCCATGTCTTCGATTCGCTTATCCTCACTGCTTCCAAAATGCTTCACAAAGAACCCAACTGTGTAACGATAGACCCTTTTCAACCCAATTCCGATTCCGATGACGGCGCTCCTTCCACCGTCGTTGTCGTGGGAGATGTTCATGGCCAATTGCATGATCTATTGTTCCTCCTTAGAGATGCTGGTTATCCTGCTCATAATCGGATATTTGTCTTCAATGGTGATTATGTGGACAGAGGAGCCTGGGGTCTGGAAACTTTCTTGCTCTTGTTGGCGTGGAAGGTGTTTATGCCGCATAACATGTATTTGCTCCGTGGAAATCATGAATCAAAATACTGTACATCCGTTTATGGCTTTGAGAAAGAAGTACTGGTAAAGTATGGTGATAAAGGTAAGCATGTATACCGGAAATGTTTGGGATGCTTTGAAGGTCTTCCTTTGGCATCTATTATAGCTGGACGCGTATACACCGCTCATGGAGGACTTTTCCGCAGTGTAACTGTGACGCCATCAAAGAGATTGAAAGGAAAGAAGAACCGTAAGATAAATCTTAATCCTGATACGAAATCTTTATCTCTTGGTTCCTTGGAGGAATTATCTAAGGCTCGACGGTCAGTTCTTGATCCCCCTTGGGAAGGTTCAAACTTAATTCCTGGTGATGTTTTGTGGTCTGATCCATCAAAAATTCCTGGGCTTGCTCCAAACAAAGAAAGAGGTATTGGCTTGTTGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAGTACCAGCTAAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCAAGGGAAAAGAGGGATGGTTTTAATGGAATGACTGAAGGTTACACTATTGATCATATTGTTGAGTCTGGAAAGATGATCACTCTGTTCAGTGCTCCAGACTACCCACAATTTCAGGCAACAGAGGAGAGGTATAATAACAAAGGAGCCTATGTCGTCCTTGAACCCCCAAATTTTGACAATCCAGTATTCCATTGCTTTGAAGCAGTTACTCCAAGGCCAAAGGCAAACGCATATTACGATTACGAAGAGGTGATAGACTCGGATGAAGAATTGGACCTGGCATCCATGGTAACTGCCTGA 1440 0.4493 MNVSASNSDSSPTIPSSTMIVTADSAEPPPLPPPHSDGSATSPFDSDQNPPAPSSSSSPPSSSTPPPEFQIPVSWPREGKLSLDWIHNLMACFDWSSKNLPPSELPSVLPVHVFDSLILTASKMLHKEPNCVTIDPFQPNSDSDDGAPSTVVVVGDVHGQLHDLLFLLRDAGYPAHNRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPHNMYLLRGNHESKYCTSVYGFEKEVLVKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSVTVTPSKRLKGKKNRKINLNPDTKSLSLGSLEELSKARRSVLDPPWEGSNLIPGDVLWSDPSKIPGLAPNKERGIGLLWGPDCTEEFLKKYQLKLIIRSHEGPDAREKRDGFNGMTEGYTIDHIVESGKMITLFSAPDYPQFQATEERYNNKGAYVVLEPPNFDNPVFHCFEAVTPRPKANAYYDYEEVIDSDEELDLASMVTA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1196 479 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 51 476 - -
Glsi05g1196 479 Pfam Calcineurin-like phosphoesterase 150 378 IPR004843 GO:0016787
Glsi05g1196 479 ProSitePatterns Serine/threonine specific protein phosphatases signature. 214 219 IPR006186 GO:0016787
Glsi05g1196 479 Gene3D - 105 475 IPR029052 -
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 213 237 IPR006186 GO:0016787
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 404 420 IPR006186 GO:0016787
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 150 177 IPR006186 GO:0016787
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 250 276 IPR006186 GO:0016787
Glsi05g1196 479 PRINTS Serine/threonine phosphatase family signature 310 337 IPR006186 GO:0016787
Glsi05g1196 479 MobiDBLite consensus disorder prediction 53 72 - -
Glsi05g1196 479 SUPERFAMILY Metallo-dependent phosphatases 104 454 IPR029052 -
Glsi05g1196 479 FunFam Serine/threonine-protein phosphatase 93 474 - -
Glsi05g1196 479 MobiDBLite consensus disorder prediction 1 23 - -
Glsi05g1196 479 MobiDBLite consensus disorder prediction 1 73 - -
Glsi05g1196 479 CDD MPP_PP7 75 460 IPR041754 -
Glsi05g1196 479 SMART pp2a_7 109 453 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1196 Glsi-ChrGlsi05 61538594 61544152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1196 64 370 Calmodulin-binding Proteins AT5G63870 72.403 3.07e-163 461