Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1195 ATGGAATTTAAACCTCCCAAGTTCTATGGAGAGGGGCTTAACTGCCTTAAGTTGTGGAGAGCTGTGACCAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAGACCTCCAAAGACATGCACAACTGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCTCTTCTTGATTATGAAAGGTATAGAACAAAGGGTGGTGAACTTACTGTGCCTATTGCTTCTCATTCAGAGCCTATGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCAAGGAGAGATGCTGCAGCACGGGCTATGCAGGGATGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTAGTGACCCTATTATCAAGGATAGGAATTTGATGGCTTTGCAGAAGCGTGAAAAGCAGCTTAAAAGCATCAGTTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAGCCACAATTGGACACTGTAGTTGTTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTTCAAAAAACTAAAGACTGTTTTGAGGTCTACGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTTCAATCAGACCCAGCAGGACGCTTGGTCATAAGTGGTGAACCTGAGCATCCTGATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCGTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTGACATTGCACGGGCAGCTGTTTGTCCGTGTCCCATTTGAGCAATCAGAGTAG 831 0.4452 MEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLDYERYRTKGGELTVPIASHSEPMNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNLMALQKREKQLKSISLLKRKKPSYMDNAVKAARSKPSKPQLDTVVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1195 276 ProSiteProfiles ARID domain profile. 1 73 IPR001606 GO:0003677
Glsi05g1195 276 SUPERFAMILY ARID-like 4 86 IPR036431 GO:0003677
Glsi05g1195 276 FunFam AT-rich interactive domain-containing protein 3 168 276 - -
Glsi05g1195 276 SMART bright_3 1 74 IPR001606 GO:0003677
Glsi05g1195 276 FunFam AT-rich interactive domain-containing protein 3 1 81 - -
Glsi05g1195 276 Gene3D - 169 276 IPR008978 -
Glsi05g1195 276 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 1 275 IPR045147 GO:0006357
Glsi05g1195 276 Pfam ARID/BRIGHT DNA binding domain 4 69 IPR001606 GO:0003677
Glsi05g1195 276 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 176 276 IPR002068 -
Glsi05g1195 276 SMART ARID_2 1 69 - -
Glsi05g1195 276 CDD ACD_sHsps-like 191 271 - -
Glsi05g1195 276 CDD ARID 2 69 - -
Glsi05g1195 276 Gene3D - 1 79 IPR036431 GO:0003677
Glsi05g1195 276 SUPERFAMILY HSP20-like chaperones 185 272 IPR008978 -
Glsi05g1195 276 Pfam Hsp20/alpha crystallin family 193 275 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1195 Glsi-ChrGlsi05 61532151 61537534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1195 1 274 ARID Transcription Factor Family AT1G76510 66.667 3.93e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi05g1195 HSP20 2.5e-06 CL0190