Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1185 ATGCTTTCCCTCCAATGCTGTAGCCGCCACAGGCCTGAGATGGGTCCACGGCCTTTACTCTCCCTCACATCCACCGCCGCCATCATCAGCATTTTGCTGCTCTTCCCAGCGGCCACCTCCCAAGCTGAGATTCAAAAGACAGAAAATCACGTCTTTGGTCCCTTTGACCACTCCTACTACGAAACATTCGATGTCATATCTCCGGCGGCTATCAGCAACGGAGCTCTCCAAGTTACACCGGACAGCGCCGGAAACTTTAGTCTGACAAACAATTCCGGCCGAGTCCTTTTCCCGCGACCTTTTAGGCTTTGGGAGGATGACTTTAATGGAAAAGTTGCTTCCTTTAACACCTCATTCCTGGTCAACATCTTCCGCGTGAACAACGCTACTCCAGGCGAAGGCCTTGCTTTCATGATTGGTCCTGCTTTGGGGGCTCTTCCTCCAAATAGCCATGGCCAGTTTCTGGGTCTCACCAACTCCACCACCGATGGCAACGCCACGAACCAATTCATCGCAATCGAATTGGATACCGTGAAGCAGGACTTCGACCCAGATGATAATCATCTCGGACTTAACATCAATAGCGTTCGGTCCAAGTTGAACGTTTCCTTGTCCCGACTAGGCTTCCAGATCGCCCCAAATGGTACCAAATTCTACGTGCTCTGGGTGGAGTACGATGGTGCACAGAAGGTGCTCGACGTATATATGGCAGAGCAACCAGATAAAGATGCCCCAATAGTGGCTAAGCCCGCAAAACCAGTGTTAAGCTCAGATCTTGATCTCAGAAGCATCGTGAAACAGATCTCCTACTTTGGCTTTGCTGCTTCGACGGGAAGCACCTTTGAGTTGAACTGCGTTCTGAAGTGGAACATCACGGTGGATTATCTACCCGAGAAGAGCAACTCTGGGCGGTTACTGAAGATCGGTTTGGGTATTGGGGTGCCTCTGTTAGTTCTGATTCTAGTGGGTTTTGCTGGGCTGATCTATTACGTATGCAGGAAGAAAAGGGCAAGTGCCTTCTCTGACTCGCAAATAATGGGCACGCTCAAGAGCCTCCCAGGAATGCCAAGAGAGTTTCCGTTCAAGGACCTGAAGAAGGCGACCAACAATTTCGACGAGAAGAAGAAGCTGGGTCAAGGTGGATTTGGTGTCGTTTATAGAGGAACTCTGCCACCGGAGAACTTGGAAGTGGCCGTCAAGAAATTTTCCAGGGACAGCATAAAAAGCAAAGACGATTTCCTCGCTGAGCTCACCATTATTAACCGTCTCCGGCATAAACATCTTGTCCGTTTGCTCGGATGGTGTCACAAAAACGGGGTGCTACTATTGGTTTACGAGTTCATGCCCAATGGAAGCTTGGACCACCACATTTTCTGCGAGGCAGGGAGTAGCACAACCCCTCTAAGTTGGCATCTAAGGTACAAGATTATATCAGGGGTGGCTTCTGCACTGCACTACCTCCACAACGAGTACGATCAGAGAGTGGTCCACAGAGACCTCAAGGCCAGCAACATCATGCTGGACTCCAACTTCAACGCTCGTTTAGGCGACTTCGGTTTGGCTCGTGCTCTGGAGAATGAGAAAACCTCCTACGCAGAGCTAGAAGGAGTCCCTGGAACCATGGGTTACATTGCCCCCGAGTGCTTCCACACCGGCAAGGCTACCCGCGAGTCAGATGTTTATGGCTTCGGGGCTGTGTTGCTGGAGGTGGTGTGTGGTCAGCGGCCATGGACCAAGATTGAAGGCTATCAGTTCTTGGTGGATTGGACGTGGTACCTTCATCGTGAAGGAAAGATATTAGAGGCAGTCGATAAGAGATTGGGGAATGACTACGCGGTTGAAGAAGCAGAGAGGGTTCTGAAATTGGGACTAGCATGCTCTCATCCTATTGCTAGTGAGAGGCCTAAAATGCAAAGTATTGTTCAGATTATATCTGGGGCTGTGCCTGTGCCTCATGTCCCTCCATTCAAGCCAGCTTTTGTGTGGCCAGCGGGTGATCTAGGGAGCTTTGCAAGTGACCTTACAACTTCATCAACCACTCATGAGTTCACACCCCTTAACACACATTCTTCGATGCATGTTGAATACTCCGATAGCTCTCAAGTCTAA 2109 0.5012 MLSLQCCSRHRPEMGPRPLLSLTSTAAIISILLLFPAATSQAEIQKTENHVFGPFDHSYYETFDVISPAAISNGALQVTPDSAGNFSLTNNSGRVLFPRPFRLWEDDFNGKVASFNTSFLVNIFRVNNATPGEGLAFMIGPALGALPPNSHGQFLGLTNSTTDGNATNQFIAIELDTVKQDFDPDDNHLGLNINSVRSKLNVSLSRLGFQIAPNGTKFYVLWVEYDGAQKVLDVYMAEQPDKDAPIVAKPAKPVLSSDLDLRSIVKQISYFGFAASTGSTFELNCVLKWNITVDYLPEKSNSGRLLKIGLGIGVPLLVLILVGFAGLIYYVCRKKRASAFSDSQIMGTLKSLPGMPREFPFKDLKKATNNFDEKKKLGQGGFGVVYRGTLPPENLEVAVKKFSRDSIKSKDDFLAELTIINRLRHKHLVRLLGWCHKNGVLLLVYEFMPNGSLDHHIFCEAGSSTTPLSWHLRYKIISGVASALHYLHNEYDQRVVHRDLKASNIMLDSNFNARLGDFGLARALENEKTSYAELEGVPGTMGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQRPWTKIEGYQFLVDWTWYLHREGKILEAVDKRLGNDYAVEEAERVLKLGLACSHPIASERPKMQSIVQIISGAVPVPHVPPFKPAFVWPAGDLGSFASDLTTSSTTHEFTPLNTHSSMHVEYSDSSQV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1185 702 Pfam Protein kinase domain 372 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1185 702 Gene3D - 48 306 - -
Glsi05g1185 702 SMART serkin_6 371 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1185 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Glsi05g1185 702 SUPERFAMILY Protein kinase-like (PK-like) 353 679 IPR011009 -
Glsi05g1185 702 Gene3D Phosphorylase Kinase; domain 1 356 447 - -
Glsi05g1185 702 SUPERFAMILY Concanavalin A-like lectins/glucanases 55 296 IPR013320 -
Glsi05g1185 702 ProSiteProfiles Protein kinase domain profile. 371 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1185 702 FunFam probable L-type lectin-domain containing receptor kinase S.5 356 447 - -
Glsi05g1185 702 ProSitePatterns Protein kinases ATP-binding region signature. 377 401 IPR017441 GO:0005524
Glsi05g1185 702 CDD lectin_legume_LecRK_Arcelin_ConA 72 290 IPR001220 GO:0030246
Glsi05g1185 702 CDD STKc_IRAK 377 644 - -
Glsi05g1185 702 Gene3D Transferase(Phosphotransferase) domain 1 448 649 - -
Glsi05g1185 702 Pfam Legume lectin domain 63 299 IPR001220 GO:0030246
Glsi05g1185 702 FunFam probable L-type lectin-domain containing receptor kinase S.5 448 649 - -
Glsi05g1185 702 PANTHER - 76 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1185 Glsi-ChrGlsi05 61452372 61455787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1185 91 665 Receptor kinase-like Gene Family AT5G55830 39.641 1.48e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi05g1185 Pkinase 2.7e-49 CL0016