Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1178 ATGATCGTTGATTTTCCACCATCCATGGCTCAAAGTGAAAGGACAAACAGATCTTCCTTTAGCTCTGGCAATGGTAATGAGGATACTCCTGTACACAACCATGCTGCTACTAGCAATGATGACTATGACAGTGATAGTTCTAATTTTGCACCACCTACACCAACAACTCTAACAATGGCTATTCGAGCAGAACTTGCTGGCACTGTCCCCTTGATTGATAGGTTCGGGGTGGGAAAGTATATTTACTCTAATCTAGCTGCCATAATCTCTCCGGGCCTCCAAGTCCAAGAGAAATTTACTTTTGAGGACATGCTGTGTTTCCAAAAGCATAATGGTGTGAACACTGATTCTGAGATTCAGGCTCTTGCACTAAACACATTAAATGCCTTGAAGCGCTCTGTCAAGGCTGGTCCCTTGCATATAATATCTGGATGTGAGGAGATTGAAGCTCTGTTAACTGGGAAAAAGCTTACAACCATGTCAACAACGGTTGCAGATGCTGTTGAGTATGAGAAAATCCAAGTAGGCGAAATAAATATGGGGGAGAGTGGGAATGAAATGAGTGTAAGTGGTTTGAAATGTTATGGCAGAATTTTGTCTTTGATGGAATCTGATGAAGGAAATCTATATGCAGCTAATTTCATACTTTTTGGGATTAAGGCTCATAGTTGCTAGGAGTACATTGCGTTAGATGATAACATATATATTGGGGATATCCTGGCGGAATTTAAGGCAGCAAAAGATCGAAGCAAGGGGGAAATTTTGCACTGTAAACTGGTATACAAGAAAAAGCTGTTTCGTGAGTCAGATGAAGCTGTGGCAGATCCAATGTTTGTGCAATTGTCCTATGTTCAATTGCAACATGATTATATTTTGGGTAATTATCCTGTTGGAAGGGATGATGCTGCCCAACTATCAGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGTGCACCTGAATCATGCACGGCGAAGAAATTTGTGCAGCTCTTCAAACACATAAATTATGTAATGTTCCGCTGCCATTCCAAAGCACGAGTTGCTGCTAGTGGTTCTGCGAATGGAGATATTTCTAACAATTTTAAGCCTTCTAATCTGGAATCATATGAAAGGTGTTTTAACAAACGCCAAAGTGAACCATCATACCCGGAGGGCATTTCTTTTGGATATGGTGCAATTCTAGAGAAAAGGAACATAGAAGCAATGTTGGCCAAGTTCAGTAATCTGGTAATAGAGAATGCCACCAAAAAGGATACTGTTGGAGAAAATAATCAAGTTGAGGATGAGCTAAAACTTAGTGAAGATAAGCTGTTTGCAGCAGAAGCAACAATCAAAAGACTAACAAATGAAAAATTGATTTTGGAAAGGAAGCTAGCAGAGCTTGAGAACAGAAATGTTGATGAGAAGCTTGAAGAGTTTAAACAAGAATTAGCTGCTGCTGAGTTGACTTTGTCAGTCAAGGACTGTGAGTTGGTTGCATTGCAGAATAATTTAAAGGAACTGGAAGAACTGAGAGAAATGAAAGAGCACCAAGTGCTGCCAATCCTCTCTACGACGCCTTGGGACTTTTATGAGATGGGTTCCTCCCAGGCTATGCAGCTTTTCTGCTCCCAATTGGATGCCTCACCCCACCAAAGGAAGATAATAGAGGAATACGGCCAGGCAGTTCATGACCTGTTAATGGATATAGGGGAAAAGATGGCAGTGTCTCTGTGTTATGGTGTTGATTTCAAGGAGTGGACCTGCCTGTTCAAGATCAACAACTATAGCTTCACCTCAGAAACCATAGGCTCCTTTGGTGTTGAAGTGATGAACAAGTCTGGTTCCTTTGTGGAAATCCCTCCAAAAGCAGGGACCCTCTTTACCCTTCTTGGGGATGTTGCTCATGTAAGTGAATCTGCACTGAAATTTGTAAATGAAGCTTGCATTGCATCATTGAGTATGAAAATGGAGGAAGGAAATGTTGAAGCACCAGAGGAGCTGGTGGACTCTGATCCCCCACGTCTCTTTCTTCCTTTTGCGTATGAAGATTACAGAAAACTCAGATTATCGCAAAACAAGGGTGCTGGTGAAGCCCTCGCGCTGTTACTCACCCATCCTTTGATCACATAA 2115 0.4165 MIVDFPPSMAQSERTNRSSFSSGNGNEDTPVHNHAATSNDDYDSDSSNFAPPTPTTLTMAIRAELAGTVPLIDRFGVGKYIYSNLAAIISPGLQVQEKFTFEDMLCFQKHNGVNTDSEIQALALNTLNALKRSVKAGPLHIISGCEEIEALLTGKKLTTMSTTVADAVEYEKIQVGEINMGESGNEMSVSGLKCYGRILSLMESDEGNLYAANFILFGIKAHSCXEYIALDDNIYIGDILAEFKAAKDRSKGEILHCKLVYKKKLFRESDEAVADPMFVQLSYVQLQHDYILGNYPVGRDDAAQLSALQILAEIGFVSAPESCTAKKFVQLFKHINYVMFRCHSKARVAASGSANGDISNNFKPSNLESYERCFNKRQSEPSYPEGISFGYGAILEKRNIEAMLAKFSNLVIENATKKDTVGENNQVEDELKLSEDKLFAAEATIKRLTNEKLILERKLAELENRNVDEKLEEFKQELAAAELTLSVKDCELVALQNNLKELEELREMKEHQVLPILSTTPWDFYEMGSSQAMQLFCSQLDASPHQRKIIEEYGQAVHDLLMDIGEKMAVSLCYGVDFKEWTCLFKINNYSFTSETIGSFGVEVMNKSGSFVEIPPKAGTLFTLLGDVAHVSESALKFVNEACIASLSMKMEEGNVEAPEELVDSDPPRLFLPFAYEDYRKLRLSQNKGAGEALALLLTHPLIT 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1178 704 CDD FERM_B-lobe 279 333 IPR019748 -
Glsi05g1178 704 Pfam FERM central domain 270 432 IPR019748 -
Glsi05g1178 704 Gene3D - 265 357 IPR014352 -
Glsi05g1178 704 MobiDBLite consensus disorder prediction 1 54 - -
Glsi05g1178 704 PANTHER MYOSIN VII, XV 6 81 - -
Glsi05g1178 704 Coils Coil 424 512 - -
Glsi05g1178 704 SUPERFAMILY Second domain of FERM 262 318 IPR035963 -
Glsi05g1178 704 MobiDBLite consensus disorder prediction 9 54 - -
Glsi05g1178 704 SUPERFAMILY Clavaminate synthase-like 541 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1178 Glsi-ChrGlsi05 61355155 61369839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1178 329 510 Calmodulin-binding Proteins AT5G65930 31.179 4.95e-17 84.0