Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1167 ATGCCACAAAACTGCATAGCACCTAAACCAGAATACTGCAGTAGTAACCCTGAAGAAGGAGCACAAGAGATGACCGAGGCCGATAACTCAACTGTCCTTGCCTACCCCATTCAAACCAATGAACAGTCCTTACCAAAACTGAATTTATACCCAATAACTTTGAAGTTCGAGGAATTGGTATACAAAGCTAAACTAGAGCAGAAAGGACTGTGTTGGGGCAGTGCATGGAGTTCCAGAGAGAAGACCATATTAAATGGGATTACAGGTATGGTTTGCCCAGGAGAAATACTAGCTATGCTGGGCCCATCAGGCAGTGGCAAAACCACACTTCTTACAGCTCTTGGAGGCCGTCTCAGTGGTAAATTATCTGGAAAGATCACATACAACGGTCAGCCTTTCTCAGGTGTCATAAAACGAAGAACAGGGTTCGTAGCTCAAGAGGATGTTCTATACCCTCATCTGACTGTTTCTGAAACTCTAGTATTTACTGCACTTCTAAGGCTGCCAAACAGCTTGACCCGGGATGAGAAAGTTCAGCATGTAGAGCGGGTCATCACTGAGCTGGGACTGACTCGGTGCAGGAATAGCATGATAGGAGGCCCACTTTTCAGAGGAATATCAGGTGGAGAGAAAAAGAGGGTGAGTATAGGTCAGGAAATGCTCATCAATCCAAGCCTCCTATTGTTAGATGAGCCGACTTCAGGTTTGGACTCTACCACAGCACAAAGGATCCTAAACACAATCAAACGCCTGGCTAGTGGGGGTAGAACTGTTATCACCACCATTCATCAACCCTCTAGCCGTCTCTTCTATATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGCTGCCCCATCTATAATGGTCCTGCTTCAACGGCCATGGAGTACTTTTCATCTATTGGTTTTTCCACAACCATGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCCCCAGACTCCAAGCATGCAACTGAGCAAAGTGAGAGCCTGGAGCAAGAACGAAAGCAGGTGAGAGAAGCTCTCATTTCTGCTTATGACAAGAACATAGCCACAAGGTTGAAAGCTGAGCTTTGCAGCTTGAATGTGAACAATTACAATATCACAAAAGATCCTTCTGCAAGAAATGACATAAAACCAGAGCAATGGTGCACAAGCTGGTGGCATCAGTTCAAGGTACTGTTACAAAGGGGCGTGAGGGAGCGAAGGCATGAGGCTTTCAACAGGCTTAGAATATTCCAGGTCATAAGCGTTGCTTTTCTTGGCGGACTCTTGTGGTGGCATACACCAGAATCGCACATTGAAGACCGGGTAGCCTTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAGGAAAGAAGAATGCTGATCAAGGAACGGTCATCAGGAATGTACCGCCTTTCTTCCTACTTTCTAGCTAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTCATCCCGTGACTTTTATCCTTTCCCTTCTAGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTTGGCTTAGCATTTGGTGCTATTCTGATGGAGATTAAACAGGCCACTACTTTAGCTTCTGTCACAACTCTAGTATTTCTCATTGCTGGAGGATACTACATACAACAGATTCCTCCCTTCATCGCGTGGCTCAAGTACTTAAGCTATAGCTACTACTGCTACAAACTTCTTCTCGGTGTCCAGTACAATGAAGATGATTCTTACGAGTGCTCAAAGGGGGTCTTGTGCAGGGTTGGTGATTTTCCTCCTATCAAATCAATGGGTTTGAACCATTTGTGGGTTGATGTGGCCATTATGGCTTTGATGTTAGTGGGTTATCGACTAATTGCTTACATGGCACTACATAGAGTGAGGTAG 1968 0.4502 MPQNCIAPKPEYCSSNPEEGAQEMTEADNSTVLAYPIQTNEQSLPKLNLYPITLKFEELVYKAKLEQKGLCWGSAWSSREKTILNGITGMVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGVIKRRTGFVAQEDVLYPHLTVSETLVFTALLRLPNSLTRDEKVQHVERVITELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVITTIHQPSSRLFYMFDKVVLLSEGCPIYNGPASTAMEYFSSIGFSTTMTVNPADLLLDLANGIAPDSKHATEQSESLEQERKQVREALISAYDKNIATRLKAELCSLNVNNYNITKDPSARNDIKPEQWCTSWWHQFKVLLQRGVRERRHEAFNRLRIFQVISVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPHPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIAWLKYLSYSYYCYKLLLGVQYNEDDSYECSKGVLCRVGDFPPIKSMGLNHLWVDVAIMALMLVGYRLIAYMALHRVR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1167 655 Gene3D - 73 301 IPR027417 -
Glsi05g1167 655 Pfam ABC transporter 84 234 IPR003439 GO:0005524
Glsi05g1167 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 300 IPR027417 -
Glsi05g1167 655 FunFam ABC transporter G family member 22 71 300 - -
Glsi05g1167 655 Coils Coil 325 352 - -
Glsi05g1167 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 648 - -
Glsi05g1167 655 CDD ABCG_EPDR 51 288 - -
Glsi05g1167 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 306 IPR003439 GO:0005524
Glsi05g1167 655 Pfam ABC-2 type transporter 263 337 IPR043926 GO:0140359
Glsi05g1167 655 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Glsi05g1167 655 SMART AAA_5 93 283 IPR003593 GO:0016887
Glsi05g1167 655 Pfam ABC-2 type transporter 394 599 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1167 Glsi-ChrGlsi05 61278226 61281033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1167 83 282 Calmodulin-binding Proteins AT2G36910 30.806 1.59e-14 75.5