Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1138 ATGGGATCCAGTGGTAGCAAAGCCAGTTCTTCTTGCAGTTCATCGTTGACATCGTCTTCTTCGGGTAGTTTTCGTAAGGGTCGATCTAAAGGGCGTAGAGGTTTTCAGTCGTATTGTTTAGGAACAACATCTGGATCTCATGACAATGATAATGATGACCAGGTTTGTGATCAGAGTAAAGTGAATGACAGTGATGTTATGAACACCAATGGCAACGAAACAGAGTCAGATGAGGGGATAACGGAGTCTTTTAGAAAGGTTAAAACTGATGAAATTCCTTGTATGCCTCCCAACATCCACCTTGATGAGTGGAGTCGAACAAACATTTCCAATAACGCATCCAGAACTGGTAGCAGTTCTGCCCGTGCAGCTTCAACTGAGTCTTTGAACCCTTCAAGTGGATTTCTTTCTCGGTTTAGCCTCATTCCCGGTAACATAAGCTTCAGACTAAGCAGAACCTCAAGTTTGGGGTCATCAAGGCCTTGCACTGTTTCTTCTGCAAGTCTCTCAATATTTAACAATGAAGATGACCTTCATCTGCATCCAGGACCTGCTGGCAGCTTGGTCAATCATGATGAAGCTCGACAATGCAGTGACTTGCTTCCTGCATCTTTTGTTGATCAGATGCCTTCACATTGCTATGAAGACGCTTCTAATAATTTGAGGTCTAATGCCCCAGCGTTAGGTTCCTCTGGCAACTTCCAAAACAATCCAACAAATTCTACTATGCAGGATGTGGTCAGACATATAGATGGTACAAGAGAAGGGATGAATCTGAACTTGTTTTCTCCAAGAATCCATGCTGGAACAGAAAATGTTGAGACAAGACATAATGATCGGCGAAATGGAGCTCAAGAACCTGTTGAGCGGAATGTTCGTTTTAGCCGTACACTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAGACTTCACCTTTTGCCCACTGCAACAAGAGAGGGATGTCAGAGATGCTAGTCAAGATAATGGAAGACAAGCAGGGGAGAGAGATTCAAGAGTGTCGCCATCTGATAGTAACACTGTCAATTCTCCTTCTACATCTGGATATCCTCCATCCAGTATATCTGGCTCCTTGTTCAGCATCCAAGACTATGACGTTGAGACTTCAAGATCTAGAGAAGCGAGGTATCATGATCTACTGGAACATAGATCCAATTTCCTAGAAAGAAGAAGAAGGATACGGTCCCAGGTTCGTGCTCTTCAGCGATTGGGTAGCCGGTTTGAAAACCTGTCTGGGCATGATAGATCGTGTATCTTGTCCGGTCAACATAGAAATGGTCATTGTACATGCCGAATCAGTAGTCATGATGCCAATTCAAATGGTGAAACCAGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCGCCTTATGAAGTTGTGGAGTCCTTGCCTGTCAAACTATACACAAAGTTGCATAAACATCAAGAGGATGCTGCTCAATGCTATATTTGCCTTGTGGAGTATGAAGATGGAGACAGTATGCGAGTACTACCATGTCGTCATGAATTCCACAGAACATGCATAGACAAGTGGCTCAAGGAGATTCACAGGGTATGCCCACTGTGTCGGGGGGACATCTGCATATCAGATTCACTGCCATCGGAGAACTGA 1731 0.4396 MGSSGSKASSSCSSSLTSSSSGSFRKGRSKGRRGFQSYCLGTTSGSHDNDNDDQVCDQSKVNDSDVMNTNGNETESDEGITESFRKVKTDEIPCMPPNIHLDEWSRTNISNNASRTGSSSARAASTESLNPSSGFLSRFSLIPGNISFRLSRTSSLGSSRPCTVSSASLSIFNNEDDLHLHPGPAGSLVNHDEARQCSDLLPASFVDQMPSHCYEDASNNLRSNAPALGSSGNFQNNPTNSTMQDVVRHIDGTREGMNLNLFSPRIHAGTENVETRHNDRRNGAQEPVERNVRFSRTLSVGRLRDRVLRRSDFTFCPLQQERDVRDASQDNGRQAGERDSRVSPSDSNTVNSPSTSGYPPSSISGSLFSIQDYDVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRISSHDANSNGETSARASISRIVMLAEALFEVLDEIHQQSVVLSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCRHEFHRTCIDKWLKEIHRVCPLCRGDICISDSLPSEN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1138 576 Pfam Ring finger domain 520 563 IPR001841 -
Glsi05g1138 576 SMART ring_2 521 562 IPR001841 -
Glsi05g1138 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 567 IPR013083 -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 321 363 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 1 81 - -
Glsi05g1138 576 FunFam Putative RING zinc finger domain superfamily protein 490 568 - -
Glsi05g1138 576 ProSiteProfiles Zinc finger RING-type profile. 521 563 IPR001841 -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 341 363 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 110 131 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 270 287 - -
Glsi05g1138 576 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 575 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 60 77 - -
Glsi05g1138 576 SUPERFAMILY RING/U-box 499 569 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 323 340 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 1 25 - -
Glsi05g1138 576 MobiDBLite consensus disorder prediction 265 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1138 Glsi-ChrGlsi05 61068005 61072328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1138 237 570 C3H Transcription Factor Family AT5G45290 58.790 1.14e-113 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1138 05 61068005 61072328 Glsi05g1138 05 61068005 61072328 ECH