Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1132 ATGAAGCAGCCATCAAAGCCATGGAGACCATTCACAGCAAACTGCTGCTCAACGGAGGACCAAACCATCTTTAGCAAATTCAGCAGGTGCAAGCCATCGCGTTCAGATTTGTCGAAGGACATTGCTGCCTTACCTTCGTTTCGGAGGTTGTCTTTCTCTGATCTGAGCCGCTCTTCGTCCATGCGAATCAATGAAGATCTAGCACAGTCATTTGGTTCGGAGCTGCATGATTTTCAGCTGAGCGAACTACGAGCCATAACCCAGAATTTCTCGAGCAATTTCTTGTTGGGGGAAGGTGGGTTCGGGACGGTGCATAAGGGCTATATTGATGACAACTTGAGACAAGGCTTGAAGGCTCAGCCCGTTGCTGTTAAGCTTCTCGACATTGAAGGCTTACAAGGACATCGCGAATGGCTTGCAGAAGTAATATTTCTTGGGCAGCTAAGGCACCCAAACCTGGTGAAGTTGATTGGGTATTGTTGTGAGGATGAAGAGCGGCTCCTTGTCTACGAATTCATGCCACGAGGAAGTTTGGAGAATCACTTGTTCAGAAGGATAACATCACTGCCATGGGCAACCAGATTAAGAATTGCAATAGGTGCAGCTAAAGGCCTTGCCTTCTTGCATGAGGCAGAGAAGCCAGTCATATACAGGGACTTCAAAACTTCCAACGTCTTGCTTGATTCGAATTTTACAGCTAAATTGTCGGATTTTGGTCTCGCAACAATGGGGCCTGAGGGATCTAACACGCACGTTACTACTACAGTTATGGGCACCTATGGATATGCAGCCCCCGAATATATATCCACAGGGCACTTAACCACTAAAAGTGATGTCTATAGTTTTGGGGTAGTCCTGCTTGAACTACTTACAGGAAGGAGAGCAATGGAGAAGACAAGACCAAAGACAGAGCAAAACCTTGTGGATTGGTCAAGACCTTACCTGAGTAGCAGTAGGAAGTTGCGTTATATAATGGATCCAAGGCTTGCTGGCCAATATTCTGTGAAGGGTGCCAAGGAGATGGCTCTTTTGGCAATGCAATGCATAAGTCTAAATCCTAAAGATAGGTCGAGGATGCCAGCAATTGTTGAAACTCTTGAAAACTTGCAGCAGTTCAAGGACATGGCTATTACCAGTGGACACTGGCCTGCATCGCCTAAACCTAGAAATGGAGCTTCCAATAAGATGAAAATTGATATCAGAGTTGGTGCAAACCATAAGAAGCCCTCTCCCGTAGTTGCAACCATAAAAACTTGA 1257 0.459 MKQPSKPWRPFTANCCSTEDQTIFSKFSRCKPSRSDLSKDIAALPSFRRLSFSDLSRSSSMRINEDLAQSFGSELHDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRITSLPWATRLRIAIGAAKGLAFLHEAEKPVIYRDFKTSNVLLDSNFTAKLSDFGLATMGPEGSNTHVTTTVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMEKTRPKTEQNLVDWSRPYLSSSRKLRYIMDPRLAGQYSVKGAKEMALLAMQCISLNPKDRSRMPAIVETLENLQQFKDMAITSGHWPASPKPRNGASNKMKIDIRVGANHKKPSPVVATIKT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1132 418 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Glsi05g1132 418 PANTHER OS01G0588500 PROTEIN-RELATED 61 370 - -
Glsi05g1132 418 SUPERFAMILY Protein kinase-like (PK-like) 71 367 IPR011009 -
Glsi05g1132 418 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Glsi05g1132 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Glsi05g1132 418 FunFam Serine/threonine-protein kinase BIK1 56 172 - -
Glsi05g1132 418 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g1132 418 Gene3D Transferase(Phosphotransferase) domain 1 173 381 - -
Glsi05g1132 418 CDD STKc_IRAK 96 369 - -
Glsi05g1132 418 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 379 - -
Glsi05g1132 418 Gene3D Phosphorylase Kinase; domain 1 52 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1132 Glsi-ChrGlsi05 61025719 61028423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1132 78 408 Glycoside Hydrolase AT3G07070 47.761 1.55e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi05g1132 PK_Tyr_Ser-Thr 1.4e-46 CL0016