Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1121 ATGACAATCTTGCATTCACCGCCACAATCTAAATATATTGATGATAAGCCCTTACTTGGCCGGCTTCGTCTCCCATTTACATTCAACTCATTGGTATCAATATTAATTGCTCTGATCTCATCTATGGCAGATGGTGATCCTCCCGTCTTCACAGACAACGTCACAGTCCTACTCATTGCTATGGGCTCAGCTGCCTTGGTGGTCACAATGTACCATCTCCTAGCCGTTTGCTTGTGCAGACAGCAAATCACAGACCAAAACCCAGAACAACCACCACCCCACCGGAATCTAGTCACGGGAACGGCGCAAACGCCGAGCATCAACGAGACCTCGATGGCGAATCTGATTCCCGCCCACAAGTATGAGAAGAAGATTGATGTGGCAGATGACGAAGACGATGGGACTTGTGCTGTGTGCTTGGGAGATTTTGAGGAGGGTGAGGAGTTAAGATCGTTGCCCGAGTGCATGCACTCTTTTCATGTAACATGCATAGATATGTGGCTCTATTCTCATTCCAGTTGCCCCGTTTGCCGTGCCGATGCCAAGCCTTCTCCGGCCATGCTCCGCTGCCTGCCGCCGGAGTTTGTTCCCAGTGAATCAAACGCTCATCATGATCACCGTATAGATATTATTCAAAATGCTTTGGTCCAAAGTGGGATAGCACGACGATGA 672 0.4896 MTILHSPPQSKYIDDKPLLGRLRLPFTFNSLVSILIALISSMADGDPPVFTDNVTVLLIAMGSAALVVTMYHLLAVCLCRQQITDQNPEQPPPHRNLVTGTAQTPSINETSMANLIPAHKYEKKIDVADDEDDGTCAVCLGDFEEGEELRSLPECMHSFHVTCIDMWLYSHSSCPVCRADAKPSPAMLRCLPPEFVPSESNAHHDHRIDIIQNALVQSGIARR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1121 223 CDD RING-H2_EL5-like 136 178 - -
Glsi05g1121 223 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Glsi05g1121 223 SUPERFAMILY RING/U-box 129 184 - -
Glsi05g1121 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 184 IPR013083 -
Glsi05g1121 223 Pfam Ring finger domain 135 178 IPR001841 -
Glsi05g1121 223 SMART ring_2 136 177 IPR001841 -
Glsi05g1121 223 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 54 182 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1121 Glsi-ChrGlsi05 60970633 60971304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1121 56 179 C3H Transcription Factor Family AT5G17600 36.154 6.61e-20 85.1