Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1115 ATGGAGTTCAGTGAGCATGAGAGCATGTCAGTTCGAGAGGTCTGTGCAAATGGAAGCTGCATGAGAACAACAGAAGTTGAGGCGAAACTTGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTGCGAGAAGGGTTATCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGGAAGTTGGAGTACCAGAGAGGTAATTTGGAAGGTGCTTTTCGTGTGTTTGAAGGGATTGATCTCCAAGCTGCCATACAGCGACTGCAACCCTCCATTTCTGAAAAACCATCAACCAAGAAAGGTCGCACTCGTACTGAATCACCTCCCTCGGTCTCTCAGCATGCTGCCAGTTTGGTACTTGAAGCCATCTACTTAAAAGCCAGGTCTCTACAAACCCTGGGGAGATTATCTGACGCTGCTAATGAATGCAAAAGTGTACTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGACAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATCATGAGGCAATATCTGCTTATAGGCGTGCCCTTCTTAGTCACTGGAACCTTGATAGTGATTGCTGTGCCAGAATTCAGAAAGCCTTTGTTGTATTTTTGCTGTACAGTGGGGTGGAGGCTAGCCCACCCAGTTTAGCAGTTCAGATTGACGGGTCTTATGTACCTAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTTATTAGGAAGTTTTGCCTTGGTAAAACCAAATGGGACCCTTCAGTGATGGAGCACCTGACTTTTGCACTTTCTGTATGCAGCCAAACATGTGTTTTAGCAAAGCAATTTGAAGAGTTAATGCCTGGAGTGTATAATCGCGTTGACCGTTGGAATTCTTTAGCTTTATGTCAAAGTGGATGTGGACAAAACATTAGTGCTTTGAATCTGCTAAGGAGATCTTTGCACAAACATGAACGACCATATGACCTTATGTCATTGCTATTGGCTGCCAGGATCTGCAGCCAGGATCCTTTTCTTGCTGCTGAGGGAGTGGGGTATGCACAGAGGGCAATCACAAATGCTCAGGGCCGGTATGAGCATCTTAGAGGTGTGGGTCTTCGGATGTTGGGACTTTGTCTTGGAAAGCAAGCTCAGGTTGCTTCCTCTGACTTTGAGAGGTCTCATCTTCAGTCCAAAGCTCTGAAATCATTGGAGGAAGCAACTGGATTGGAGCAAAACAATTCTGATCTGATTTTTGAGTCTGCTATTCAATATGCAGAGCACCGAAATTTGGCTGCTGCTTTGCGCTTTGCGAAGCAGTTCTTTGATGAAACAGGCGGCTCTATATTTAAAGGTTGGAGATTGCTTGCTCTTGTTTTGTCTGCTCAACAAAGATTTTCAGAGGCTGTGGTGGTAACAGATGCAGCTTTAGATGAGACAACAAAATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGCTGAAGATCTCCCAGTCACGGCCCATGGATGCTATTGAAACTTATCGATACCTCCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGGCCTCCCATTAGTAGTTTGCAGGCTGAGGATGGTAAAGTAAATGAATTTGACATTTGGCATGATCTGGCAAGTTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATATGTTTGAAAAAGGCCAGAGAGATGAAGCAGTACTCCGCAGCAACGATGCACACCAAAGGTGTAATATCCGAAGGATGCGGGGAAGATCAAGCTGCTCTTGGTGCTTTCTTTAATGCTTTCATATTTGATCCAAGCTATGTTCCAAGCAAGATCTTGGCGGGTGCTTTGATGCTGAAAATGGGTTCAAAGGGTTTGTCTGTGGCAAGAAGCTTACTTTCTGATGCACTAAGGATAGAACCCACAAACCACATGGCTTGGTATTACTTGGGAATGGTTCACAAGAATGATGGTCGAATTGGTGACGCTGCTGACTGTTTCCAGGCAGCTTCCATGCTCGAAGAATCGGATCCCATAGAAAGTTTCACCACTGTTCTTTGA 2085 0.4451 MEFSEHESMSVREVCANGSCMRTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNLEGAFRVFEGIDLQAAIQRLQPSISEKPSTKKGRTRTESPPSVSQHAASLVLEAIYLKARSLQTLGRLSDAANECKSVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGCYHEAISAYRRALLSHWNLDSDCCARIQKAFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCSQTCVLAKQFEELMPGVYNRVDRWNSLALCQSGCGQNISALNLLRRSLHKHERPYDLMSLLLAARICSQDPFLAAEGVGYAQRAITNAQGRYEHLRGVGLRMLGLCLGKQAQVASSDFERSHLQSKALKSLEEATGLEQNNSDLIFESAIQYAEHRNLAAALRFAKQFFDETGGSIFKGWRLLALVLSAQQRFSEAVVVTDAALDETTKWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQRKSFGPPISSLQAEDGKVNEFDIWHDLASLYASLSHWKDAEICLKKAREMKQYSAATMHTKGVISEGCGEDQAALGAFFNAFIFDPSYVPSKILAGALMLKMGSKGLSVARSLLSDALRIEPTNHMAWYYLGMVHKNDGRIGDAADCFQAASMLEESDPIESFTTVL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1115 694 PANTHER PROTEIN NPG1 5 690 IPR043376 -
Glsi05g1115 694 SUPERFAMILY TPR-like 406 507 IPR011990 GO:0005515
Glsi05g1115 694 MobiDBLite consensus disorder prediction 88 109 - -
Glsi05g1115 694 SUPERFAMILY TPR-like 118 449 IPR011990 GO:0005515
Glsi05g1115 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Glsi05g1115 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Glsi05g1115 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Glsi05g1115 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Glsi05g1115 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Glsi05g1115 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Glsi05g1115 694 SUPERFAMILY TPR-like 497 682 IPR011990 GO:0005515
Glsi05g1115 694 Gene3D Tetratricopeptide repeat domain 395 688 IPR011990 GO:0005515
Glsi05g1115 694 Gene3D Tetratricopeptide repeat domain 26 223 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1115 Glsi-ChrGlsi05 60941120 60944944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1115 2 694 Calmodulin-binding Proteins AT2G43040 73.926 0.0 1014