Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1111 ATGGCTGTAAATCTCACGGAAGGAGCAATAACGACTATGTGCGAGGATGATTTCTCTTCGGAGGACCTGAAGCCAGTGCTCCAAGTAATCGACTTGAAGCTTGTGCAGTCGCAGCAGCATAGCAGCACCGAGAGGTACAGGCTTGTGCTTTCTGATGGTTCGCATTACCAGCAAGGGATGCTCGCTACTCAGAAGAACGAGTTGGTCAATTCTGGAAGGTTGCAGAAAGGCTCCGTCGTTAAGTTGACTCAATTTATCTGCAACGTTGTCCAGAACCGCAAGATTATCATCATCATTGAGCTGGATGTGGTAATTGAAAAATGTGAACTGATTGGGGAACCTGTCCCAGCACCAAGAACTGTACCTGCACAATCTTCCACTGGTCAGGCTGGGGCTACCACTGGAGCTCCCCAGTCTTTGACTAGTAGTCCATCTGCAGGTGGCATGCTTGCTCGATCAAATGTAGGTGGGCCATCCATGGATCATCCAAAAATGAATCATCCTGCCAGTAGTGCTTATTCTAGTGGTTCTGACTCTGCAAGATATGGTGTTTCAAATGTTCCCCCTCCTTTGTCTAAAGCAGAGCCTAGAGCCACTTTAACTAAATCATCACCATTCAGTGGGTCATATGGTGATCAGAACATGAGCTTCCGCAACCCCCAACCACAAGCTTCAAGGCCCCTGCAAAATTCTTATGCTCGTCCACCTCAGCCTATGTATAGACAGCCGTCTCCAATTTACAGTAATAGAGGACCAATAGCAAGAAATGAAGCTCCCCCAAGGATAATTCCAATAGCTGCATTGAATCCATACCAAAATATGTGGACAATCAAGGCTAGAGTAACAGCAAAAGGAGAACTCAGGCACTACAATAATGCTCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATCATCAAATTGAAGCTGGGAAAGTCTATATGATTTCCCGAGGAAGTATAAAGCCAGCTCAAAAGAATTTTAATCACCTACGTAATGATCAAGAACTGACCCTTGATATTACTTCAATTATTCAGCCATGCCTTGATGATGACAAGTCAATTCCAAAGCATCTGTTTAATTTTCGTCCTATTAGTGAAGTTGAAAGTATGGAAAATTCCAGTGTTGTGGACGTGATTGGTGTTGTATTTTCTATTAGTCCTACAACTTCAATCATGAAAAAAAATGGTACTGAAACTCAGAAGAGAACCCTCCAGTTGAAAGACATGTCTGGATGCAGCGTTGAATTAACCCTATGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTGCAGAGTATTTGTGATTCTGGAGCATTTCCAGTTTTGGCTGTGAAAGCTGTCAGAGTAAATGACTTCAATGGGAAGGCTGTTGGGACCATACTTACTAGCCAGGTATTTATAGAGCCTGATTTTCCTGAGGCATACAGGCTGAAAGAATGGTTTGACAAGGAAGGGAGGAACATTCCAACTATTTCTATTTCCAGAGAATCATTCAGTGTTGGGAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAAGTGTTTCATTCATTAAGGTTGATAGTTTCTGCTATACAGCTTGTCCCATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGAGGTGCGATAGGTGTGATCAGTCTATGGATACGTGTGACTATAGGTATATACTACAATTACAAATACAGGACCACACTGGCTTAGCATGGGTTACTGCTTTTCAGGAGTGTGGTGAGGAGATCATGGGCTTACCTGCCAAAGATCTGTATAATTTGAAATATGAAGAGCAAGATGATGAAAGATTTGCTGGAGTCATCCGTAAGGTTCTCTTTACTAAATATGTATTCAAATTAAAAGTAAAGGAGGAGACATTTGGTGATGAACAGCGGGTAAAGTCAACAGTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAGTCCAGATTTCTTCTGGATTTGATTGATAACCTTAGAACTGAGAAGGCAGGTGTCAATCCTAACTCTGTAATGAATAATTCTGGACTGGGGAGTGTTGGAACTGGACTAGCTGCACCGCCAGTTTATAATCCTATAAAAAGCAACAGTAGAGAATATGGGATGCCAGCAAATCAAGTGGGTCAGTATGAACACCAATATAGTAGTTCTTTTGCTTCAACTGGGTCTTCCGGTTCATTCATGTCTTGCAACAACTGTGGTGGCTCTGGCCATAGCTCTATGCATTGCCCCAAAATTACAAGTGCGCCAAGACAGTCTATGGGAGGGGCTTTTGCAAACAGGGTATCTTCTGGGTCAGGTGTTGGTGTTGGCGCTGGTGAATGCTTTAAATGCCATCGAACTGGCCACTGGGCAAGAGACTGTCCTGGTACCAATGCAGCAGCCTCTCCTGCTTATGGAAGCAGTAGTGTATTACAAGGAGCATATGGGGTTGCTCACAAGCAACAACTTGGTGGATTTTGA 2598 0.4296 MAVNLTEGAITTMCEDDFSSEDLKPVLQVIDLKLVQSQQHSSTERYRLVLSDGSHYQQGMLATQKNELVNSGRLQKGSVVKLTQFICNVVQNRKIIIIIELDVVIEKCELIGEPVPAPRTVPAQSSTGQAGATTGAPQSLTSSPSAGGMLARSNVGGPSMDHPKMNHPASSAYSSGSDSARYGVSNVPPPLSKAEPRATLTKSSPFSGSYGDQNMSFRNPQPQASRPLQNSYARPPQPMYRQPSPIYSNRGPIARNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYHQIEAGKVYMISRGSIKPAQKNFNHLRNDQELTLDITSIIQPCLDDDKSIPKHLFNFRPISEVESMENSSVVDVIGVVFSISPTTSIMKKNGTETQKRTLQLKDMSGCSVELTLWGNFCNAEGQRLQSICDSGAFPVLAVKAVRVNDFNGKAVGTILTSQVFIEPDFPEAYRLKEWFDKEGRNIPTISISRESFSVGKTDMRKTISQIKDEKLGTSEKPDWISVCASVSFIKVDSFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSMDTCDYRYILQLQIQDHTGLAWVTAFQECGEEIMGLPAKDLYNLKYEEQDDERFAGVIRKVLFTKYVFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFLLDLIDNLRTEKAGVNPNSVMNNSGLGSVGTGLAAPPVYNPIKSNSREYGMPANQVGQYEHQYSSSFASTGSSGSFMSCNNCGGSGHSSMHCPKITSAPRQSMGGAFANRVSSGSGVGVGAGECFKCHRTGHWARDCPGTNAAASPAYGSSSVLQGAYGVAHKQQLGGF 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1111 865 MobiDBLite consensus disorder prediction 197 237 - -
Glsi05g1111 865 Gene3D - 374 513 IPR012340 -
Glsi05g1111 865 Gene3D - 261 371 IPR012340 -
Glsi05g1111 865 FunFam Replication protein A subunit 513 704 - -
Glsi05g1111 865 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Glsi05g1111 865 SMART c2hcfinal6 774 790 IPR001878 GO:0003676|GO:0008270
Glsi05g1111 865 SMART c2hcfinal6 819 835 IPR001878 GO:0003676|GO:0008270
Glsi05g1111 865 ProSiteProfiles Zinc finger CCHC-type profile. 775 790 IPR001878 GO:0003676|GO:0008270
Glsi05g1111 865 SUPERFAMILY Retrovirus zinc finger-like domains 807 837 IPR036875 GO:0003676|GO:0008270
Glsi05g1111 865 ProSiteProfiles Zinc finger CCHC-type profile. 820 834 IPR001878 GO:0003676|GO:0008270
Glsi05g1111 865 SUPERFAMILY Nucleic acid-binding proteins 380 509 IPR012340 -
Glsi05g1111 865 MobiDBLite consensus disorder prediction 168 182 - -
Glsi05g1111 865 FunFam Replication protein A subunit 374 512 - -
Glsi05g1111 865 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Glsi05g1111 865 CDD RPA1_DBD_A 264 366 - -
Glsi05g1111 865 Gene3D - 773 842 - -
Glsi05g1111 865 NCBIfam replication factor-a protein 1 (rpa1) 237 702 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi05g1111 865 CDD RPA1_DBD_B 396 503 - -
Glsi05g1111 865 PANTHER REPLICATION FACTOR A 1, RFA1 275 685 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi05g1111 865 FunFam Replication protein A subunit 4 118 - -
Glsi05g1111 865 MobiDBLite consensus disorder prediction 120 149 - -
Glsi05g1111 865 CDD RPA1_DBD_C 530 703 IPR047192 -
Glsi05g1111 865 SUPERFAMILY Nucleic acid-binding proteins 261 374 IPR012340 -
Glsi05g1111 865 Pfam OB-fold nucleic acid binding domain 275 364 IPR004365 GO:0003676
Glsi05g1111 865 Pfam Replication protein A OB domain 385 488 IPR031657 -
Glsi05g1111 865 CDD RPA1N 8 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Glsi05g1111 865 Gene3D - 514 704 IPR012340 -
Glsi05g1111 865 FunFam Replication protein A subunit 261 371 - -
Glsi05g1111 865 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Glsi05g1111 865 MobiDBLite consensus disorder prediction 119 255 - -
Glsi05g1111 865 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Glsi05g1111 865 Gene3D - 3 117 IPR012340 -
Glsi05g1111 865 Pfam Zinc knuckle 819 834 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1111 Glsi-ChrGlsi05 60914907 60918584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1111 1 804 Core DNA Replication Machinery Family AT5G45400 53.286 0.0 880
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1111 05 60914907 60918584 Glsi05g1111 05 60914907 60918584 ECH