Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1108 ATGGAGAAAACCAGGTCTGATCACGTTGTTCTCTTCATTGACCATCTAAACTCTAGTCCTAATTCCTCTATGGAAGCCCAAAACGACTACCACACTGCCACTTCCAATCGCGAGAACCCCAAACACCCTTCAAGGATGAAAACCCTTAAACGTCTCAGCTTCTCCAAACCCAAATCCCGCATCCTAGAATATAACTATCCACCCAGCAGCGTTAACAAACTAACAATCTCTGAAGAAAGTGACATCCAACCTTCCTACAAGTTCTCTTCCACCGATGAAGAATTAGAAGATGACGAGGATTGGAACGACGAAGAAGAGCTCGATGAAGATGGGGCAGAGCATGGACCCAACAAGTTACACCAAAAGAAGAAGCGTAAAATCCAGTGGAGGCGCGTGGTGGAGTGGGCTTTGTTTCTCATCATATTGGCTGGCTTGCTGTGTTCTCTCACCATAGCTTCCGTCAAGACTAAGCATTTATGGGGTTTGGAGATTTGGAAATGGTGTTTGATGGTAATGGTCACGTTCAGTGGGCGTTTGGTCTCTGGGTGGCTAGTGGGCGTCTCTGTTTTTATCATATTGCGAAACTTCATGCTCAGAGAGAAGGTCTTGTACTTCATCTATGGACTACGAAATAGCATCAGAAACTGTCTGTGGTTAGCCCTTGTTTTGTTCTCCTACTGGACCCTAGTATTCGACAACATCCAGAAGGAAGACAACAAGCTCCTCAACAAGGTGTTTAAAGGACTAGTGGCTGTTCTAGTTGGTGCTATAATTTGGCTTGCGAAAATTGTGCTAGTGAAAATGCTGGCCTCTTCTTTCCACGTGACTACCTACTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTATATTCTGGATAATCTATCAGGTCCACCAATGGAGGAGAATGAAGAAATGAAGCGCCATTTAACTGAGTCAAAGTCCATGCCTGCGAACTCATGGAAGGGAAGGAAAATGAAAGATGGGAGGAACCTGTACAAGTCGAAGAAGTTTGGGCCGGGGAAGATTGACATGGAGAAGCTGAGAGAGCTGAGTATGGAGAGCACAGCGTCGGCCTGGAGTGTGAAGAGGCTGGTTAACTATGTGAGGTCGTCTGGGTTATCCACCATTTCGAGGACTGCGGATGCTTTTGGTAATGCTGAGTCCGAGATCAATAGCGAGTGGGAAGCTAGAAATTGTGCCCAAAGGATCTTCAAGAACGTTGCCAAACCCGGTGCCAAGTATATCGAAGAGGAGGATCTAATGAGATTTTTGAAGAGGGTTGAGATTCATACTATATTCCCGCTCTTTGAAGGTGCCCTTGAAACGGGAAAGATCAGCAGGTCTTCATTCAGAAATTGGTTGATTCGAGCTTATCATGAAAGAAAAGCTCTAGCACAATCGTTGAATGATACGAAAACAGCAGTTCAACAGCTTCACAAAATAGCAAGCGCAATTGTGATAGTGATAATAATGATTGTGCTCCTTGTGGTGATGGAGTTGGCTACAATCAAGGTAATACTATTCTTTATTACACAAATAGTTCTAGTTGGTGTTGCCTTCCAAGGTACTTGCAAGACTGTCTTGGAGGCCATCATCTTTGTGTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGTGTCATTGATGGTGTTCAGATGATTGTGGAAGAGATGAATATCTTGACAACGGTGTTTCTTCGATATGACAATGAGAAAATTTACTACCCTAACGCAGTTTTGCTCAGTAAGCCCATAAGCAATTTCTATAGGAGTCCAGAAATGTGGGATGCCATTGATTTTACTATTGATGTCTCAACTCCTATGGAGACCATCATTGCCTTCAAGAAAGCAATACAAATGTACATTGAAAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGTGAACCAGATAGAGAATTTGGATAAGCTGAAGCTGTGCTTATCTGTTCAACACACCATTAACCATCAGAACTATGGGGAGCGAAACAATCGGATAACAGAGCTTCTCTTGGAACTGAAGAAGATCTTCGAGATTCAGGGTGTTAAATACAATCTTCTTCCTCAGGAGATCCACCTTACTCAGATTAGCACTGACAATAGCAGAGTTATGTTATAA 2127 0.4335 MEKTRSDHVVLFIDHLNSSPNSSMEAQNDYHTATSNRENPKHPSRMKTLKRLSFSKPKSRILEYNYPPSSVNKLTISEESDIQPSYKFSSTDEELEDDEDWNDEEELDEDGAEHGPNKLHQKKKRKIQWRRVVEWALFLIILAGLLCSLTIASVKTKHLWGLEIWKWCLMVMVTFSGRLVSGWLVGVSVFIILRNFMLREKVLYFIYGLRNSIRNCLWLALVLFSYWTLVFDNIQKEDNKLLNKVFKGLVAVLVGAIIWLAKIVLVKMLASSFHVTTYFDRMKESVFHHYILDNLSGPPMEENEEMKRHLTESKSMPANSWKGRKMKDGRNLYKSKKFGPGKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTADAFGNAESEINSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWLIRAYHERKALAQSLNDTKTAVQQLHKIASAIVIVIIMIVLLVVMELATIKVILFFITQIVLVGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMWDAIDFTIDVSTPMETIIAFKKAIQMYIESKPKYWNPKHSVIVNQIENLDKLKLCLSVQHTINHQNYGERNNRITELLLELKKIFEIQGVKYNLLPQEIHLTQISTDNSRVML 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1108 708 MobiDBLite consensus disorder prediction 87 119 - -
Glsi05g1108 708 SUPERFAMILY Sm-like ribonucleoproteins 531 589 IPR010920 -
Glsi05g1108 708 MobiDBLite consensus disorder prediction 92 110 - -
Glsi05g1108 708 MobiDBLite consensus disorder prediction 15 34 - -
Glsi05g1108 708 FunFam Predicted mechanosensitive ion channel 540 589 - -
Glsi05g1108 708 MobiDBLite consensus disorder prediction 15 52 - -
Glsi05g1108 708 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 701 IPR016688 -
Glsi05g1108 708 PIRSF Memb_At2g17000 6 707 IPR016688 -
Glsi05g1108 708 Gene3D - 540 589 IPR023408 -
Glsi05g1108 708 Pfam Mechanosensitive ion channel 482 686 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1108 Glsi-ChrGlsi05 60892897 60897602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1108 13 698 Mechanosensitive Ion Channel Family AT5G12080 42.978 0.0 573