Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1102 ATGAGCGTTCCGCCGCCAATGTGGACGGGAGTCCAGGCGCCGTTCACGGTGGCCCAGTGGCAGGAGCTGGAGCACCAAGCTCTCATCTTTAAGTATCTCAAGGCCGGGTTGACTGTTCCACCCGACCTCCTCGTCCCGATTCGCAAGAGTCTCCAATTGATGTCGGCGAAGCTCGTCCATCACCCAGCTTTGGGTTATTCCTCCTATTACAGGAAGAAGATAGACCCAGAACCGGGAAGGTGCCGGAGGACGGATGGCAAGAAGTGGAGGTGCTCCAGAGATGCACATCCGGACTCTAGGTACTGTGAGCGGCACATGATTCGCCGCCGCTACCGTTCAAGAAAGCCTGTGGAATCACAAGCTGCTCCTCAGTCCTCTGACATTGCTGCTGGGAGCAGAAGTGGTTGTGGAAGCGCATTCCACAACCTGTCCTTGCACACAAATGATAATCGCGAGGGTTTAAGCCTTGGAAACAACGTATCGCAGCTGCAGATAGAGTCTCTTCCCAGTGAAATTAGCAAGAAAGAGTACAGGTTTGGACTGCACTCTGAAGTAGACGAGCATGACTTCTTACAGAAAGGCCTGGGAAATGTGAGGTATCATGGTATTGACTCTCCTTCAGATGGCATGTGGTCTCATTTATCTCAGATTTCCTCAAATCCTGTCTCCGAATCAAGTAATAATTCTGTTATGGTGAGCAACTGCTTTCAACTGTGGGCGATGCAAGATGCTGAGCCATTGAACATTGATGCTGCAAGGTCCAAGCAACATGTCTTTGGTGGCCAGTTAAGTTCAGCTGGGTGTTTGAAACAGGAATATCAGTCCCCTCAGACTCTCTTCAGTGACTGGCCCTGGAAGAAGGATTTAGGATCCATTGAGTATAGACCCAATAAGGATTCTAACAGCAACCCAGATGTTAACGTTGATTGCTGTGAAAATGGTGCTTTTCATAGGAATGTAGATGCATCACATCACATTCCTATAGCTGATGGGGTCATTTTGACATTTGATGGGTTACGATGTGGAGATCATATTTATAACTGCTTTAGCAAAGGCCTTCCCACAGAGATGCCAGCAAATCAACAAAAGTATATTTTTATTATTAACAGTGATGATTCCTACTTCCCATTCTTCATGACTTGGGAGAATCCAGAAGAAGGATATCACATCGGTTTGAAAACAATCCTAGTATGCTTGACATCATTCACCGTTTGCTTGAACTCAATTGAAGCTACTTGGACGATTATGAATGCAAAAGCTGTAAAAAATAGCATTGCTCGGCAAATGAAGGTGACGAGGCACTCTGATATTTTCAAGAGCGATTCCGCTGAGGAAAAGATCGTATCTTTGGTTCACTCTGTCAAGGGAATTGCTGAAGAGGCCGAGAAGGCTAAGAGAAAACTTATTATACCAGACGCTGCTGCGGAAGAGAAGAACAACTTGCTTGAACCCTACAAAGCCAATGGTCTCGACATGGAGAGTCATTCATGGGGTCAGAATCTTCATGAGGTGAATGCCACTATCCCTGTTCCTCCTGGAACCAAAGCCAGATTCGTTGTTTGTGAGATAAAGAAGCATCACTTAAAGGTGGGGCTCAACGGGGAGAAACCCATTATTCATGGGGAGCTATATGAGCCTGTGAAGAATGATGACTGCTTCTGGGGTCTGGAAAACAATAAGGCAATATCTATTATCATGACTAAGGGTAAGGATCAATGGTGGAAGTCCTTGTTCAACGGTGGCCCTGAGGTTGATACCCAGAAAGCTGAGCCTGAACCCGCTCAGCTCTCTGATTTGGACTCGGAAGCTAGGTCGGTTGTGGAGAAGATGATGTTCAACCAGAGGCAGAAGCAATTGGCTCTTCCAACTAGTGATGAGATTAAGAGCCAGGAAGTGTTCAAGCAATTCATGGCTAAAAATCCTAACATAAACATCTTTGGAGCAAAGTTTATGTAG 1956 0.4627 MSVPPPMWTGVQAPFTVAQWQELEHQALIFKYLKAGLTVPPDLLVPIRKSLQLMSAKLVHHPALGYSSYYRKKIDPEPGRCRRTDGKKWRCSRDAHPDSRYCERHMIRRRYRSRKPVESQAAPQSSDIAAGSRSGCGSAFHNLSLHTNDNREGLSLGNNVSQLQIESLPSEISKKEYRFGLHSEVDEHDFLQKGLGNVRYHGIDSPSDGMWSHLSQISSNPVSESSNNSVMVSNCFQLWAMQDAEPLNIDAARSKQHVFGGQLSSAGCLKQEYQSPQTLFSDWPWKKDLGSIEYRPNKDSNSNPDVNVDCCENGAFHRNVDASHHIPIADGVILTFDGLRCGDHIYNCFSKGLPTEMPANQQKYIFIINSDDSYFPFFMTWENPEEGYHIGLKTILVCLTSFTVCLNSIEATWTIMNAKAVKNSIARQMKVTRHSDIFKSDSAEEKIVSLVHSVKGIAEEAEKAKRKLIIPDAAAEEKNNLLEPYKANGLDMESHSWGQNLHEVNATIPVPPGTKARFVVCEIKKHHLKVGLNGEKPIIHGELYEPVKNDDCFWGLENNKAISIIMTKGKDQWWKSLFNGGPEVDTQKAEPEPAQLSDLDSEARSVVEKMMFNQRQKQLALPTSDEIKSQEVFKQFMAKNPNINIFGAKFM 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1102 651 SUPERFAMILY HSP20-like chaperones 477 592 IPR008978 -
Glsi05g1102 651 Pfam WRC 76 118 IPR014977 -
Glsi05g1102 651 ProSiteProfiles CS domain profile. 490 578 IPR007052 -
Glsi05g1102 651 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi05g1102 651 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi05g1102 651 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 427 636 IPR037898 -
Glsi05g1102 651 CDD p23_NUDC_like 496 578 - -
Glsi05g1102 651 MobiDBLite consensus disorder prediction 118 133 - -
Glsi05g1102 651 Pfam CS domain 494 568 IPR007052 -
Glsi05g1102 651 Pfam QLQ 14 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi05g1102 651 MobiDBLite consensus disorder prediction 112 133 - -
Glsi05g1102 651 FunFam Nuclear migration protein nudC 486 612 - -
Glsi05g1102 651 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Glsi05g1102 651 Gene3D - 486 612 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1102 Glsi-ChrGlsi05 60850208 60855470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1102 14 118 GRF Transcription Factor Family AT3G13960 57.798 9.95e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Glsi05g1102 CS 9.4e-14 CL0190