Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1083 ATGGCAGCAAACTTAGGCAGTCACTTTGGCTGCGACATACCAGAAAACACAAGCCGCCATACTTGGTATTCACCAGAAACAGGAATATACAATAGCAAATACACTCCTCTGGAACTTCCTACTGACCCTTTCCTTGATGTTGTTTCCTTTATTTTTTCTCACCGACATAATGGGGTTTCAGCTCTCGTTGATTCTTCATCTGGGTGTTCAATTTCTTACCTGGAATTGTTTCCTTTGGTCGAATCCATGGCATCTGGTCTCCATAAAATGGGGATTTCAAAAGGTGATGTGGTTTTACTTCTAATTCCTAATTCCATTTACTATCCCATTGTTTTCTTGGGTGTTCTGTATCTTGGTGCCATCGTTACACCGTTGAATCCTCTTAGTAGTATCCCGGAAATTCGTAAGCAAATTGCTGACTCTGGTGTGAGTCTGGCTTTTACTGTACAAGACAAAGTTAGGAAACTACAACAATTGGGCATTCCAATAATCGCGGTACCAGAAGATTTGAAGGATTTGAAGCACGTTGATTTCTCATTTTTTTATAATCTTGTTTCCGGTAACTTCGATTTGCCTCCGAGGCCCGTAATTAAACAAGAAGACACGGCGGCTATAATGTACTCTTCCGGGACTACGGGTGTGAGCAAAGGAGTTGTTCTAACACATAAAAATTTTGTTTCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATATGCAAGCTCGAAGAATGTGTTTCTAGCTGTTCTGCCAATGTTCCATATATATGGTTTATCACTCTTTGCAACAGGTTTATTGTCTTTAGGTTCTACAGTTATTGTAATGAGAAAATTTGACATCAATGAGGTGATCAAAGTGATTGATAAATACAAAGTTACACACATACCTGTTGTTCCACCAATGTTGAAAGCATTGACAAAAAGGGTAAAGGGTATAAATGGGAGTTACCTGCAGAGTTTGATACAGGTATCCTGTGGTGCAGCTCCTTTGAGCAGAAAAACTATAGAGGACTTTACACATACTCTCCCTAACGTTGATCTTATACAGGGTTATGGGATGACTGAGTCGACTGCAGTAGGAACAAGAGGCTTCAATACCAAAAAGTTTCAAAATTATTCTTCAATAGGGTTATTGGCTCCAAACATGGAAGCTAAAGTGGTCGATTGGAATACTGGTGCTTTTTTGCCCCCAGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGAGAGGATACTTGAATAATGAGGAAGCCACAAGGTCAACAATGGATAAAGATGGTTGGCTACACACTGGAGATGTCGTTTGTTTTGATCAAGATGGATATTTACATATAACTGACCGCTTGAAAGATATTATCAAATACAAGGGTTATCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATTTCGCATCCTGAGGTTGTTGATGTTGCTGTTGCAGGTGTCAATGATGAAGAAACTGGGGAGATGCCAGTGGCATTTGTGGTCAGGAAGGTTGGAAGTGTGTGTTCTCAGGAAGCTATTCTAGACTACGTTGCTGAGCAGGTTGCTCCTTATAAGAAGGTCAGGAAGGTGGTCTTCACTGACTCAATACCAAGGTCAGTAGCTGGGAAGATCCTTCGAAGGCAGCTCAGGAACTGCTTGACTTCTAAACTCTGA 1677 0.4091 MAANLGSHFGCDIPENTSRHTWYSPETGIYNSKYTPLELPTDPFLDVVSFIFSHRHNGVSALVDSSSGCSISYLELFPLVESMASGLHKMGISKGDVVLLLIPNSIYYPIVFLGVLYLGAIVTPLNPLSSIPEIRKQIADSGVSLAFTVQDKVRKLQQLGIPIIAVPEDLKDLKHVDFSFFYNLVSGNFDLPPRPVIKQEDTAAIMYSSGTTGVSKGVVLTHKNFVSMVELFVRFEASQYEYASSKNVFLAVLPMFHIYGLSLFATGLLSLGSTVIVMRKFDINEVIKVIDKYKVTHIPVVPPMLKALTKRVKGINGSYLQSLIQVSCGAAPLSRKTIEDFTHTLPNVDLIQGYGMTESTAVGTRGFNTKKFQNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMRGYLNNEEATRSTMDKDGWLHTGDVVCFDQDGYLHITDRLKDIIKYKGYQIAPADLEAVLISHPEVVDVAVAGVNDEETGEMPVAFVVRKVGSVCSQEAILDYVAEQVAPYKKVRKVVFTDSIPRSVAGKILRRQLRNCLTSKL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1083 558 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Glsi05g1083 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 24 552 - -
Glsi05g1083 558 FunFam 4-coumarate--CoA ligase 2 456 557 - -
Glsi05g1083 558 Pfam AMP-binding enzyme 55 460 IPR000873 -
Glsi05g1083 558 Gene3D - 456 556 IPR045851 -
Glsi05g1083 558 SUPERFAMILY Acetyl-CoA synthetase-like 56 554 - -
Glsi05g1083 558 CDD 4CL 39 550 - -
Glsi05g1083 558 Gene3D - 28 455 IPR042099 -
Glsi05g1083 558 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 455 - -
Glsi05g1083 558 Pfam AMP-binding enzyme C-terminal domain 470 544 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1083 Glsi-ChrGlsi05 60630376 60634589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1083 13 558 Monolignol Biosynthesis Gene Families AT4G19010 58.919 0.0 690