Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1080 ATGGCAACATGCACAGTATACACAACACAATCTTTCAACACAAACTGCTCCTTCTCAGCCATATCAAAAACCCATTTGGGTTTCCACCAAAAACAGGTAGTTTTCTACACCACAGCTAAGAGAAGCAGCAAGAGAGGAAGCAATAACACTGGGAGCCCATGTAGTGTGATAACATGTGCAGCAGGTGACTCACAGACAGTGGTGATTGGTCTGGCAGCTGACTCTGGGTGTGGGAAGAGCACCTTTATGAGAAGGCTGACCAGTGTGTTTGGAGGCGCAGCAGAGCCACCAAAGGGTGGGAACCCAGATTCCAACACTCTCATCAGTGACACCACCACTGTCATATGCTTAGATGATTACCATTCTTTGGATAGAACTGGAAGAAAGGAAAAAGGGGTCACTGCACTTGATCCTAGAGCCAACAATTTTGATCTCATGTATGAACAAGTTAAGGCCATCAAGGATGGAATTGCTGTTCAAAAACCCATTTATAATCATGTCACTGGGCTCTTGGATCCCCCAGAGCTCATCAAACCTCCCAAAATCTTGGTCATTGAAGGTTTGCACCCAATGTTTGATCCTCGGGTTAGAGAACTCTTGGACTTTAGCATCTACTTAGACATCAGCAACGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGCGGGCATAGTCTTGAAAGCATCAAAGCTAGTATTGAAGCAAGGAAACCTGATTTTGAAGCTTTTATAGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTCATTCCAGGCGATAACGAGGGGAAGATATTAAGAGTGAGGTTGATACAGAAAGAAGGGGTTGATTATTTTAGCCCTGTTTACTTGTTTGATGATGGCTCCACCATTTCCTGGATACCATGTGGGAGGAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTTCTATGGACCAGAAACCTACTATGGTCACGAGGTCTCAGTTGTAGAGATGGATGGGCAATTTGACAGATTAGATGAGCTTATATACGTAGAGAGCCATCTAAGCAACCTCTCAACCAAGTTCTATGGAGAAGTTACACAACAAATGTTGAAGCATGCAGACTTCCCCGGCAGCAACAATGGGACAGGTCTCTTTCAAACCATAATTGGTTTGAAGATAAGAGATCTATTTGAGCAGATAGTAGCCAGCAGGGCTGGGTCTCCTGTAAAGGCAGCTAAAGCTTAA 1239 0.4439 MATCTVYTTQSFNTNCSFSAISKTHLGFHQKQVVFYTTAKRSSKRGSNNTGSPCSVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAFIDPQKQYADAVIEVLPTQLIPGDNEGKILRVRLIQKEGVDYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPETYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLFEQIVASRAGSPVKAAKA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1080 412 CDD PRK 68 357 - -
Glsi05g1080 412 ProSitePatterns Phosphoribulokinase signature. 217 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Glsi05g1080 412 Gene3D - 63 302 IPR027417 -
Glsi05g1080 412 FunFam Phosphoribulokinase 63 293 - -
Glsi05g1080 412 PRINTS Phosphoribulokinase family signature 217 234 IPR006082 GO:0005524|GO:0005975|GO:0008974
Glsi05g1080 412 PRINTS Phosphoribulokinase family signature 235 258 IPR006082 GO:0005524|GO:0005975|GO:0008974
Glsi05g1080 412 PRINTS Phosphoribulokinase family signature 182 200 IPR006082 GO:0005524|GO:0005975|GO:0008974
Glsi05g1080 412 PRINTS Phosphoribulokinase family signature 73 90 IPR006082 GO:0005524|GO:0005975|GO:0008974
Glsi05g1080 412 PANTHER URIDINE KINASE 57 299 - -
Glsi05g1080 412 Pfam Phosphoribulokinase / Uridine kinase family 68 266 IPR006083 GO:0005524|GO:0016301
Glsi05g1080 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1080 Glsi-ChrGlsi05 60617813 60621226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1080 120 294 PRT Gene Family AT3G27440 26.630 1.02e-15 76.6