Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1058 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCCTTGCAAATCAGCCCTCCGAACAGCAAACCCACATCACGTTGGAGATCAAGTGCGGAAGAGGAGGTGGATTTGGGGTTCTGGAAGAGAGCCCTGGACTCCAGAAACTCACTTTCATCATCATCAATGGCCAAAGCTGATAATAACTGCTTCGACCTTTCACTCTCCAACCCAACGAGGCCTTCCTCACACTCATTTAACAATTCAAACTCAAACCTTAATATTCACCACTTCCAAAACGCTAATGTCTATCATCCCTCCTTCCATTCCTTTCAACAGAACCGTCACCACCACCACCACCAGCCACTCTTCCAGCACCAAAGCATCAGCCAAGACCTGGGCTTTCTCAGGCCCATAAGAGGAATCCCCGTCTACCAAAACCCTCCTCCTCCTCCTATCCCATTTGCTCAGAACCCTCCAGATGCTTCCACTAATCCTTCTTCTATATCTAACACAACCACAAGTTCAAGCCCTTTCCAATCTCAAGCTGGTCTTATGCGCTCAAGATTCTTGTCCAGGTTTCCTGCTAAGCGCAGCATGAGAGCTCCTCGGATGCGTTGGACTACTACACTCCATGCTCGCTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCATGAAAGGGCAACACCCAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCGCATGTTAAATCTCATTTACAGATGTACCGAACGGTGAAAACCACAGATAGAGCAGCGGCTTCGTCTGGGCAATCTGACGTATATGATAATGGATCATCTGGAGATACTTCTGAAGATTTCATGTTTGACATGAACAATTCAAGAAGGTCTGATCAATCTACTAAGCAAGGAAGACCGAGTCTTAATCAAGATAAAGAACATTATGGGCTTTGGAGTAACTCTTCCAGGATTTTGTGGGGTTCAGACATAAGGCTATTCAATGGGTCCCCCACGGTAGGAATACTTATTGTCAAAGCTAAAGCTGCTGGCAGAACCTTTATTACAAGACATCTTTGGGAAACCTGGTTGCATAGCAAGACAAAGGTCGACTCAGCTGGAAACGTAGCTTCTTTTGAGAATGAAATGGATCCAAAATGCCTAAGTTACGAGAGAGTATCAGATGGAAGTGCATCTTCAGATCTTTCAGGGACAAGCCCCAAGAAGCCTAATTTGGATTTGGAGTTTAGCTTAGGCCTGCAGCCACTTTAA 1233 0.4566 MELFPAQPDLSLQISPPNSKPTSRWRSSAEEEVDLGFWKRALDSRNSLSSSSMAKADNNCFDLSLSNPTRPSSHSFNNSNSNLNIHHFQNANVYHPSFHSFQQNRHHHHHQPLFQHQSISQDLGFLRPIRGIPVYQNPPPPPIPFAQNPPDASTNPSSISNTTTSSSPFQSQAGLMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSEDFMFDMNNSRRSDQSTKQGRPSLNQDKEHYGLWSNSSRILWGSDIRLFNGSPTVGILIVKAKAAGRTFITRHLWETWLHSKTKVDSAGNVASFENEMDPKCLSYERVSDGSASSDLSGTSPKKPNLDLEFSLGLQPL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1058 410 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 408 IPR044847 GO:0000976|GO:0006355|GO:0010158
Glsi05g1058 410 MobiDBLite consensus disorder prediction 379 400 - -
Glsi05g1058 410 MobiDBLite consensus disorder prediction 1 27 - -
Glsi05g1058 410 Gene3D - 192 249 - -
Glsi05g1058 410 MobiDBLite consensus disorder prediction 150 172 - -
Glsi05g1058 410 MobiDBLite consensus disorder prediction 380 394 - -
Glsi05g1058 410 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
Glsi05g1058 410 MobiDBLite consensus disorder prediction 274 301 - -
Glsi05g1058 410 FunFam Myb family transcription factor 191 249 - -
Glsi05g1058 410 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Glsi05g1058 410 MobiDBLite consensus disorder prediction 136 172 - -
Glsi05g1058 410 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
Glsi05g1058 410 MobiDBLite consensus disorder prediction 274 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1058 Glsi-ChrGlsi05 60415782 60419946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1058 1 406 G2-like Transcription Factor Family AT4G17695 35.814 8.82e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi05g1058 Myb_DNA-binding 2e-05 CL0123