Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1057 ATGCTGGCCACTACCCATGGTAACACACAAAATCCGCGAAACCATAACCTTATCCTCATGCCACGTGCATCTCCCGCTCGCAACAAGCAACCACGTGTCGGCTCCAACTTGGCCTTTGAAACTACGGATACTAGTGTTTCACTTTGGGATCGTGATCTAGGGTTTGGCTCTGGGATTTGGATTCAGTTTTCCGATTGTTTTTGCGATTCCACACTCAAGTGTGCCAAGACGGAGGCCTACAAGGAGAGACTCCGTAATGAAATGGTGGAAAGAAGACTTTCTTTATCCAAGGAAGCTCGAAACGGGCTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGGACAAAACTTAGTACTGCCACTGAGATAAGTATCGCTAACACAATGACAAGAAGTGGGGGAGATGCTTTAAGAGCTTCAGCATCATGTGGTATGAGATTGCATGGTAATGCAGATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGACATGAGTGATCTTGAATGGACTGAGAAAATTCCAGAATGTCCTGTTTATTATCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAATTATGGTATATGCAAGATTATTTCTCCTTTGACTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCACTTCGGCTTGCTGAGTGGGACACTGAAGACAAGGTCACATTTTTCATGAGTGGAAGAAATTATACATTCCGTGAGTTTGAGAAAATGGCAAATAAAGTTTTTGCGCATAGATATTCCAGTGCTGGATGCCTTCCTGTCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGAAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTCTCCCACTGATCAGCTTGGGAAGAGCAAATGGAATTTGAAGAAACTTTCTCGGTTGCCAAAGTCCATTTTGCGCCTCTTGGAAACAGAAATTCCGGGAGTAACAGAACCCATGCTATACATCGGAATGCTGTTTAGTATGTTTGCTTGGCACGTGGAGGATCATTATTTGTACAGTATAAATTATCATCACTGTGGGGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTGGTGAGAGAGCATGTGTACACTCATGATATTCTTTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACACTGTTTCCTCCAAATATTTTGTTGGAACATGATGTCCCTGTCTACAAGGCTGTCCAAAAGCCGGGGGAGTTTGTAGTTACATTCCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGCCGGCGTTATGCATATCTTAACAGGATGCCTCTGCTGCCTCACGAAGAACTTTTATGCAAAGAGGCATTGCTTCTTCATACAAGCTTAGAACTTGAAGATTCAGAGTTTCCCTCTGCAGACCTGTTAGCTCATAATTGCATAAAGATTTCTTTTGTGAATCTAATGCATTTTCAGCATTGTGCTCGTTGGTTCCTAATGAAATCAGGGGCTTGTACAAGTGTTTTTTCACATTCACATGGCACGATTCTCTGTAGCATCTGCAAACGTGATTGTTATGTTGCTTATGTTGACTGTGACTGTCACATGCATCCAGTGTGCCTTCGCCACGATATTGAATCTCTTGACTTCACCTGTGGGAGAAAACATACTCTTTATTTGAGGGAGGATATTACTGATATGGAAGCTGCAGCGAAGAGGTTTGAGCAGGAAGATGGAATCGTTGATGAGATACTTAACCAAACCAAGGGTGACAATAACATGTATTCATATCCTTTGTCTAATATGTTCCAGAGAGCAAAAGCAAATGGATATACTCCTTATTGTGAGATAAAGTTTGATTCTGTTATGGAACTTCATACAAGTCCAGATCTGTCATCAAATAATCAAGAGCGTGTTTTACAAAGTCAATTTGTTTTGAGACATAGCTCAGATATTAAACCTGAAGTCTTCGAGGTTTCTTTTTCTTCTGCTTCATCCACTCCTTGTTCTCTTTCAGAACCTGTTCAGAGCTCTTCTGGTTCCAAAAATGACGAAGGGCATGCTAATTTTACTTTAGGCTTTATTGATTCTGAAGAATGTTGTGAAGGAGTACCCAATGGCGGTGAATCTTCACCATCCTCAGCACGCTACCATGAAACCTCTAGTAAACCTCAGGGCGATCTTCATAGATTAGAGATGAAGCCTATCGTGGATAACGAGAGTGATGATTCTGATTCAGAAATATTTAGGGTTAAGCGGCCTTCTTCTCTGAAGGCAGAGAAGAGACATTTGAATGATACTACGTCTTCCAAGCTTTCGGAGTACCAGGAACTCAAACGCTTGAAGAAAGTTATTCATGAAGGAAGAAGTGGGCAACCAATGAATTGCAGCAGAAACAATGAATCAAGCTACAAGTATAGTCACTCTGTTAATCATAAAGTTGATGGTGAAAGTTCTTTGAGGGACAGATTTCCAAGGGGAAATAGCATTCCCATTTCTGTAAGGTATAAGAAGTCGGGCAACGAGGAAGTAAGTAGACAGAGAGATCACCACAGGAAAGATAGGTTGCAGCAGACTATTAGGGTACAACCTCCCATAGAGAGTGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTCTGAGCTTAGAGAGCAGATTAAATTGA 2829 0.4178 MLATTHGNTQNPRNHNLILMPRASPARNKQPRVGSNLAFETTDTSVSLWDRDLGFGSGIWIQFSDCFCDSTLKCAKTEAYKERLRNEMVERRLSLSKEARNGLEFLKRKRLQRTKLSTATEISIANTMTRSGGDALRASASCGMRLHGNADVFSKRKVDKFDMSDLEWTEKIPECPVYYPTKEEFEDPLVYLQKIAPEASNYGICKIISPLTASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFREFEKMANKVFAHRYSSAGCLPVTFLEKEFWHEIACGKMETVEYACDVDGSAFSSSPTDQLGKSKWNLKKLSRLPKSILRLLETEIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTHDILSSEGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAYLNRMPLLPHEELLCKEALLLHTSLELEDSEFPSADLLAHNCIKISFVNLMHFQHCARWFLMKSGACTSVFSHSHGTILCSICKRDCYVAYVDCDCHMHPVCLRHDIESLDFTCGRKHTLYLREDITDMEAAAKRFEQEDGIVDEILNQTKGDNNMYSYPLSNMFQRAKANGYTPYCEIKFDSVMELHTSPDLSSNNQERVLQSQFVLRHSSDIKPEVFEVSFSSASSTPCSLSEPVQSSSGSKNDEGHANFTLGFIDSEECCEGVPNGGESSPSSARYHETSSKPQGDLHRLEMKPIVDNESDDSDSEIFRVKRPSSLKAEKRHLNDTTSSKLSEYQELKRLKKVIHEGRSGQPMNCSRNNESSYKYSHSVNHKVDGESSLRDRFPRGNSIPISVRYKKSGNEEVSRQRDHHRKDRLQQTIRVQPPIESGPKRLKVRGPSFLSLESRLN 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1057 942 Pfam JmjC domain, hydroxylase 352 475 IPR003347 -
Glsi05g1057 942 Gene3D Cupin 175 526 - -
Glsi05g1057 942 MobiDBLite consensus disorder prediction 755 785 - -
Glsi05g1057 942 MobiDBLite consensus disorder prediction 761 775 - -
Glsi05g1057 942 MobiDBLite consensus disorder prediction 893 912 - -
Glsi05g1057 942 MobiDBLite consensus disorder prediction 866 942 - -
Glsi05g1057 942 Pfam jmjN domain 176 208 IPR003349 -
Glsi05g1057 942 ProSiteProfiles JmjN domain profile. 175 216 IPR003349 -
Glsi05g1057 942 SUPERFAMILY Clavaminate synthase-like 253 508 - -
Glsi05g1057 942 FunFam Lysine-specific demethylase isoform A 170 519 - -
Glsi05g1057 942 PANTHER LYSINE-SPECIFIC DEMETHYLASE 167 889 - -
Glsi05g1057 942 SMART JmjN_1 174 215 IPR003349 -
Glsi05g1057 942 ProSiteProfiles JmjC domain profile. 322 492 IPR003347 -
Glsi05g1057 942 MobiDBLite consensus disorder prediction 718 738 - -
Glsi05g1057 942 Pfam C5HC2 zinc finger 572 623 IPR004198 -
Glsi05g1057 942 SMART cupin_9 319 492 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1057 Glsi-ChrGlsi05 60398593 60406195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1057 172 631 JUMONJI Transcription Factor Family AT2G34880 33.396 3.31e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi05g1057 JmjC 7.1e-39 CL0029