Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1055 ATGTATGGGGATTGCCAAGTTATGTCAACAATGGGAGGGAGCGTAAACGTAGTTGTAAACCCAGAAACCCTCTTCTCCTCATCGATCCAAAACTCCAACTTTAACTTCATGCCCACCACGCCTTTCCAACCTTTCCTTCCCATGAAGGAAGAAGATGGTATCTTGCGTGGGAAGGAAGAGATGGAGAGTGGATCTGGTAGTGAACAAGCTGAAGACAAGTCTGGGAATGAGCAAGAGAGTGAACAGCCACCAAAGAAGAAACGTTACCACAGGCACACTACTCGCCAGATCCAAGAAATGGAAGCCTTGTTTAAAGAATGTCCACACCCAGACGACAAGCAGAGGCTGAAACTAAGCCAAGATCTAGGCCTTAAACCACGCCAGGTCAAATTCTGGTTTCAAAATCGTCGAACCCAGATGAAGGCACAACAGGATCGAACGGATAATGTGATACTTAGAGCAGAAAATGAGAACCTCAAGAGTGAGAACTATCGTCTACAAGCAGCGTTACGTAATGTTATTTGTCCCAATTGCGGTGGTCCTGCTATGATGGATGTTGATCTGGGGTTGGATGAGCAACAGCTTCGCCTCGAAAATGCTCGGCTAAGAGAAGAGTTAGAACGCGTTTGTTGTCTCACTTCAAGATACACAGGCCGCCCAATGCAGACAATGGCAGCAGCTCCTCCTCTTTTGGCCCCTTCATTGGATTTGGATATGAACATATACTCCAGGCACTTCGCGGATCCTACTGCTTCTTGTACGGAGATGATTCCCGTGCCAATGCTGCCTCCTGAAACTTCACCATTTCCAGAGGCAGGTCTCTTAATGGAACAAGAGAAGTCTCTGGCATTGGAACTCGCAGTGTCATCCATGGATGAACTCGTGAAGATGTGTCAGGCAACCGAGCCACTTTGGATCAGAAACACTACTGACAACGAAAGGGAAATGCTTAATTTTGAGGAGCACGCTAGGATGTTTCAATGGCCTCTCAATAACCTCAAGCACCTTTCTAGTGAGCTTAGGACAGAAGCTAGCCGTGACACTACTATGGTTATAATGAATAGCGTCACTCTTGTTGACGCCTTCCTTGATGCTCTTAAGTGGATGGAATTGTTTCCCACCATTGTTTCTAGAGCGAAAACTGTCCAAGTTATATCTCCCGGTGCTTCTGGTCATGCAAGCGGGTCTCTACAACTGATGTATGCGGAATTGCTAGTTATTTCTCCCTTGGTGTCCACTCGTGAGACTCATTTCCTTCGTTATTGCCAACAAAATGCTGAGGAGGGAACCTGGGTCATTGTTGATTTTCCTCTTGATAGCTTTCACCAAAATTTTCACCATTCTTATCCCAGATACTGCAGGCGACCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTACTCAAGGGTAACTTGGGTTGAGCATGCAGAGCTAGAAGAGAAACCCGTGCATCAGATATTCAGTAACTACGTGTACAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTTGCGAGCCTCATGGCAAGGAACATTTCAGACCTTGGAGTGATACCCTCGCCAGAAGCCCGAAAGAACTTGATGAAATTGGCTCAAAGAATGATTAGAACGTTTAGCCTTAACATGAGCACCTCCAGTGGTCAATCATGGACGGCTTTATCAGATTCCCCCGAAGATACTGTTAGAATCACAACCAGGAAAATCACAAACCCCGGTCAACCTAATGGTGTAATCCTCAGTGCCGTCTCCACCACCTGGCTTCCCTATTCTCACTGCAAGGTCTTTGACCTCCTCAAGGATGAAGGCCGCAGATCTCAGTTGGATTTTCTTTCCAATGGGAACTCGTTACATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAATTGCATCTCCCTTTTGCGTATAAATGTAGCAAGCAACTCGTCCCAGAGCGTAGAGCTAGTGCTGCAAGAGAGCTGCACCGACCAGTCGGGAAGTCTAGTAGTGTACGCCACCATCGATGTGGAGTCGATCCAGCTAGCCATGAGCGGCGAGGACCCCTCCTGCATCGCTCTTCTTCCCCAGGGGTTCGTCATAGTCCCAGCAGTACCAACAAGTAGCCTGGACACAGCCAGCGTTGCCATGGATGGAGGCAATTCATCAGCCGAAGCAGGCGGTACCACTGCAGGACCAACTTCCGCTACTGTCAATCCAGGTTGCCTTCTCACGGTGGGGCTTCAGGTTCTGGCCTCCACAATCCCTTCTGCTAAGGTCAACCTTTCCAGCGTCACCGCAATCAATAACCATCTCTGCAACACTCTGCACCAAATTGAGGCTGCTCTTTGCACCACCTGCCCCGATAATGCAAGTTTTGTTGGGTCTTGCACAGAAACCACTGGTAGCGCTCCACCCCTCAAGTAA 2436 0.4828 MYGDCQVMSTMGGSVNVVVNPETLFSSSIQNSNFNFMPTTPFQPFLPMKEEDGILRGKEEMESGSGSEQAEDKSGNEQESEQPPKKKRYHRHTTRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMKAQQDRTDNVILRAENENLKSENYRLQAALRNVICPNCGGPAMMDVDLGLDEQQLRLENARLREELERVCCLTSRYTGRPMQTMAAAPPLLAPSLDLDMNIYSRHFADPTASCTEMIPVPMLPPETSPFPEAGLLMEQEKSLALELAVSSMDELVKMCQATEPLWIRNTTDNEREMLNFEEHARMFQWPLNNLKHLSSELRTEASRDTTMVIMNSVTLVDAFLDALKWMELFPTIVSRAKTVQVISPGASGHASGSLQLMYAELLVISPLVSTRETHFLRYCQQNAEEGTWVIVDFPLDSFHQNFHHSYPRYCRRPSGCVIQDMPNGYSRVTWVEHAELEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSPEDTVRITTRKITNPGQPNGVILSAVSTTWLPYSHCKVFDLLKDEGRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQSVELVLQESCTDQSGSLVVYATIDVESIQLAMSGEDPSCIALLPQGFVIVPAVPTSSLDTASVAMDGGNSSAEAGGTTAGPTSATVNPGCLLTVGLQVLASTIPSAKVNLSSVTAINNHLCNTLHQIEAALCTTCPDNASFVGSCTETTGSAPPLK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1055 811 SMART HOX_1 84 147 IPR001356 GO:0003677
Glsi05g1055 811 ProSiteProfiles START domain profile. 276 516 IPR002913 GO:0008289
Glsi05g1055 811 SMART START_1 285 513 IPR002913 GO:0008289
Glsi05g1055 811 CDD START_ArGLABRA2_like 280 512 - -
Glsi05g1055 811 SUPERFAMILY Homeodomain-like 77 144 IPR009057 -
Glsi05g1055 811 Gene3D - 70 154 - -
Glsi05g1055 811 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Glsi05g1055 811 SUPERFAMILY Bet v1-like 279 515 - -
Glsi05g1055 811 Gene3D - 334 503 IPR023393 -
Glsi05g1055 811 FunFam Homeobox-leucine zipper protein HDG1 72 159 - -
Glsi05g1055 811 Pfam START domain 286 513 IPR002913 GO:0008289
Glsi05g1055 811 CDD homeodomain 86 144 IPR001356 GO:0003677
Glsi05g1055 811 MobiDBLite consensus disorder prediction 58 86 - -
Glsi05g1055 811 SUPERFAMILY Bet v1-like 531 783 - -
Glsi05g1055 811 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 786 IPR042160 -
Glsi05g1055 811 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Glsi05g1055 811 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Glsi05g1055 811 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1055 Glsi-ChrGlsi05 60383017 60387517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1055 28 789 Homeobox Transcription Factor Family AT5G46880 57.650 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi05g1055 START 9.4e-42 CL0209