Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1048 ATGAGCTTTCAGGATATCGAAGCCGGACGGCCTTTCGCTTCGCGGCGAGACCTAATTAATGGCAAGCAGGACCCCACACAAGCGGTGGCGTCCGGTATATTTCAGATCAATACAGCCGTGTCCACGTTTCAGAGGCTCGTTAACACCCTTGGAACCCCAAAAGACACGCCGGAGCTTCGGGAAAAGCTGCACAAGACAAGATTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGAAATAGATCACCATGTTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGGCTTTCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTACCCTCTAGCTATACAGCTAGCGAGGTAGATGTTAGTTCTGATAAGAATCCAGAACAGCGTGCTCTTCTTGTTGAATCCAGAAGGCAGGAGGTCTTGATGTTGGATAATGAGATTGCATTTAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGCGAAGTAAATGAAATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCACATGCAGCAACTGCACAAGGAAAATCTCAGCTAGTGAAAGCTGCAAAGACCCAAAGATCAAATTCATCCCTGACGTGCTTGCTTTTGGTGATATTTGGGATTGTACTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 822 0.444 MSFQDIEAGRPFASRRDLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTASEVDVSSDKNPEQRALLVESRRQEVLMLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1048 273 Pfam SNARE domain 216 268 IPR000727 -
Glsi05g1048 273 Gene3D - 20 133 - -
Glsi05g1048 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi05g1048 273 SMART tSNARE_6 175 242 IPR000727 -
Glsi05g1048 273 CDD SNARE_Qa 200 241 - -
Glsi05g1048 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Glsi05g1048 273 FunFam Syntaxin-22 like 173 273 - -
Glsi05g1048 273 CDD SynN 23 157 IPR006011 GO:0016020
Glsi05g1048 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Glsi05g1048 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Glsi05g1048 273 FunFam Syntaxin-22 like 20 133 - -
Glsi05g1048 273 SMART SynN_4 15 127 IPR006011 GO:0016020
Glsi05g1048 273 Gene3D - 157 273 - -
Glsi05g1048 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1048 Glsi-ChrGlsi05 60348754 60351803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1048 1 261 SNARE and Associated Proteins AT5G46860 80.460 3.10e-152 424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1048 05 60348754 60351803 Glsi05g1048 05 60348754 60351803 ECH