Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1046 ATGGACGGAGTGAGCAGCAGCAGCGGAGACGGCGGAACCCAGACGTCAGCGCCGGTGCCGGCAGCCATTCCTAATGCCAACGCTCCGCCTCCGTTCCTTAGTAAGACATATGACATGGTGGATGACCCGTCCTCTGATGCGGTCGTGTCTTGGAGTCCAACCAACAATAGCTTCGTGGTTTGGAACCCACCCGAGTTTGCCAGAGACCTGTTGCCTAAGTACTTCAAGCACAATAACTTCTCCAGCTTTGTTAGGCAGCTGAACACATATGGTTTCAGGAAGGTGGATCCAGACCGCTGGGAATTTGCTAATGAGGGCTTTTTAAGGGGTCAGAAGCACCTGCTCAGGAGTATAACTCGACGAAAACCTGCCCATGGTAATAGTCATCAACAAGCTCAGAATTCACATGGACAAAGTTCATCAGTAGGGGCATGTGTAGAGGTTGGGAAATTTGGGCTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGGCAGCAGCAACAGGCCACTGATAACCAGCTGCAGACAACAGTTAAACGTCTTCAGGGAATGGAGCAACGACAACAGCAGATGATGTCATTCCTTGCCAAGGCTGTTCAGAGCCCTGGCTTCTTGGCTCAGTTTGTACAACAGCAGAATGAGAGCAATAGGCGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGTATTGCTGAAACAGAGCTTACTGCAACTTCTGATGGGCAAATTGTGAAGTATCAACCTCTGATCAATGAAGCAGCACAAGCAATGATAAGACAGATCATGAAATTGGATACTTCTCAACCTGAATCTTTTAATAATAACCCTGATAATTACTTGATTGGTGATGGTTCATCATCATCCAGTGGAATGGACAGTGGCAGCTCTTCAAGCTGGACTTCTGGAGTAACACTCCAAGAGGTCGCACCAACTTCGGTGCAGTCTTCTCACATTCCAGCTGCATCAGGGACTTCAGGGCATGCCCCCTCAGCTGGCAAATCTGAAATGCAATCTTCACAATCTGCATCTGCTATCCCTGTACCTCAGGTAGACGTTATTATGCCTGACCTTTCTCCAATACCAGAGATAGTGACAGGTCTTGATATGCCTGAAGAGAATTATATGGGACCTGAGATGGACAATGAGGGATATATGGATCCTACTTCATTGGGAGCAAATGGGTCATTGCCCATTGATATTGGTAGTATTTCACCTGATACAGACATTGATGACTTGCTACGCAATTCTTCCTTTTGGGATGATGTTCTTTTGCAAAGTCCATTGCCAGAGGATATCGAGACCAATACTGCTGAAGTAGTGTCCAATGGGAATGAGTTACAGCCAATGGAAAATGGATGGGACAAAGCTCAACACATGAACCAAATTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAAAGCGAGTTTGA 1473 0.4671 MDGVSSSSGDGGTQTSAPVPAAIPNANAPPPFLSKTYDMVDDPSSDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGNSHQQAQNSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQTTVKRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKQEGIAETELTATSDGQIVKYQPLINEAAQAMIRQIMKLDTSQPESFNNNPDNYLIGDGSSSSSGMDSGSSSSWTSGVTLQEVAPTSVQSSHIPAASGTSGHAPSAGKSEMQSSQSASAIPVPQVDVIMPDLSPIPEIVTGLDMPEENYMGPEMDNEGYMDPTSLGANGSLPIDIGSISPDTDIDDLLRNSSFWDDVLLQSPLPEDIETNTAEVVSNGNELQPMENGWDKAQHMNQITEQMGLLSSDAKRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1046 490 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 Gene3D - 25 122 IPR036388 -
Glsi05g1046 490 MobiDBLite consensus disorder prediction 121 140 - -
Glsi05g1046 490 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 MobiDBLite consensus disorder prediction 282 358 - -
Glsi05g1046 490 MobiDBLite consensus disorder prediction 1 21 - -
Glsi05g1046 490 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi05g1046 490 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
Glsi05g1046 490 Coils Coil 150 177 - -
Glsi05g1046 490 MobiDBLite consensus disorder prediction 124 140 - -
Glsi05g1046 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 311 IPR027725 -
Glsi05g1046 490 MobiDBLite consensus disorder prediction 1 30 - -
Glsi05g1046 490 FunFam Heat shock transcription factor 1 25 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1046 Glsi-ChrGlsi05 60344330 60347659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1046 4 484 HSF AT1G32330 55.061 1.17e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi05g1046 HSF_DNA-bind 6.6e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1046 05 60344330 60347659 Glsi05g1046 05 60344330 60347659 ECH