Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1044 ATGAGAAGGACGAGTGGGAGGCACGGCCCTCGTGTTCGAGAAGAGGAGACTTGTTTATCCTCATCAACTTCTCAGCCGCAAGGTCCTGGACCTTCTTCCTACAAGACCCACCAAACCCCTCGTAATTCCCAACCGAGGCGGAAGAATCAAGGTGGAAAGGTCAAAGTCCAGTTTGTCAAGAAGTCTGAATTGGGTTCTTCTAGTTCCGAGGTGGATCCTTCACTTGAAGAATTAAGCATCCACGAGGAAGATGAAGGCGCACGTGAAATGCACGAAGTGAACAAAGAAGATTCAGAGTTGAAGACTGAAGTGAGAGATGTGAAGAATAACGCGGCTGATCCAAGCAAAGAAAGCGATTATATTCAGAGGAGGCTGGATAAGTTACTGAGGGATATGGAAGAGCCGGAATTGTCCGAGGAGCAGCTGAGTATTAATGATCAATCGCAGGAAGATGAGTTACTTGCGTTGGAGTCAATTTATGGAGAAAATGTCTTCAGCCTTGAGAGATGGGAAGGTCTCCGTTGTTTTCAGATACACATACACATTGAAGTTTTGGGTGAAATGGCTATCACTGCTAAGCTGAACTCTTCTGATGAACCTAAGACTGTAAGCAACAACTCAGATGACTTCGTGTACTCTTTCAAAGTCCACTATCTTCCACCGATAGTTTTGACATGTTTATTACCTAAATCATACCCAAGCCACCAACCACCTATGTTTACAATCTCTGTTAAGTGGTTGGACTCCATAGGGATTTCCAGTCTATGTGCCAAGTTGGATTCAATATGGGCTGAGCAGCAAGGGCAGGAAGTTGTATACCAGTGGGTAGAATGGCTACATTGTTCTTCTCTTTCTCATCTGGGATTTGAAAAGGAAATAACGCTTGGTCCTTATGGCATGAAACATGCTGGAGATGAGCGTGCTATTTCAAAAACTGTGTCCCTAGATTTTGATATTCCTTCAATACGAAGTTACAACAATGAGAGACAGCATGAGAATTTCCTTAAAGACTTGCATGAATGTTGCATTTGCTTTAGTGAATTTGCAGGTACGGAGTTTGCTAGATTACCATGTCAGCACTTCTTTTGCTGGAAATGCTTGCAGACCTTTACTCACATGCATGTAAAAGAAGGCACCATAAGTAATCTTAAATGTCCCGATGCAAAATGTGCTGTTATGATTCCACCAGCTCTGTTAAAACGCTTACTTGGTGATGAAGAGTATGAACGCTGGGAGTCCTTGATGTTGGAGAAAACACTTGCATCAATGTCGGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCTCCAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCATAGCATGCATGACACTTGACATGAAGCTTCGTATTTTGCAAGAGCGCCAGAATTCATCTCAATTAAAGGAAGTTCAGAAGCTTAGGGAACGTGAAAAAATTAATGAAATGCTCAGCGTCAAAGAAATTCAACGTGATTCTAAACTGTGCCCTTCTTGTCAAATGGCAATTTCGCGAACTGAAGGTTGCAATAAAATGAAGTGCGGTAATTGTGGCCAATATTTCTGTTACCGTTGCAACAAAGCAATTGATGAAAATGATCCATATGGACATTTCAGGGATGGGTCCTGTGAACTGTTCCCACAAGAAATGGTTGAGGCTTGGCAAGAGCGCATAAATCATCGCCAGGTGGTGGGACAAATACAAGCTGAACTCTTTTTTCAACGTGGCCAGCGATGTCCAAATTGTCGTCAATTTAATGCAAAGATTGGAAACAACAATCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTACTTATGCAAAGAGATTGTTAGGCGTAGCACGCAGCATTATGGACCCAGGGGCTGCAAACAGCACACCGAGGAATAG 1947 0.4314 MRRTSGRHGPRVREEETCLSSSTSQPQGPGPSSYKTHQTPRNSQPRRKNQGGKVKVQFVKKSELGSSSSEVDPSLEELSIHEEDEGAREMHEVNKEDSELKTEVRDVKNNAADPSKESDYIQRRLDKLLRDMEEPELSEEQLSINDQSQEDELLALESIYGENVFSLERWEGLRCFQIHIHIEVLGEMAITAKLNSSDEPKTVSNNSDDFVYSFKVHYLPPIVLTCLLPKSYPSHQPPMFTISVKWLDSIGISSLCAKLDSIWAEQQGQEVVYQWVEWLHCSSLSHLGFEKEITLGPYGMKHAGDERAISKTVSLDFDIPSIRSYNNERQHENFLKDLHECCICFSEFAGTEFARLPCQHFFCWKCLQTFTHMHVKEGTISNLKCPDAKCAVMIPPALLKRLLGDEEYERWESLMLEKTLASMSDVAYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLRILQERQNSSQLKEVQKLREREKINEMLSVKEIQRDSKLCPSCQMAISRTEGCNKMKCGNCGQYFCYRCNKAIDENDPYGHFRDGSCELFPQEMVEAWQERINHRQVVGQIQAELFFQRGQRCPNCRQFNAKIGNNNHMFCWACQSHYCYLCKEIVRRSTQHYGPRGCKQHTEE 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1044 648 FunFam RBR-type E3 ubiquitin transferase 336 420 - -
Glsi05g1044 648 SUPERFAMILY UBC-like 147 287 IPR016135 -
Glsi05g1044 648 CDD Rcat_RBR_RNF14 499 564 IPR047548 GO:0008270
Glsi05g1044 648 FunFam RBR-type E3 ubiquitin transferase 137 288 - -
Glsi05g1044 648 ProSiteProfiles TRIAD supradomain profile. 337 566 IPR044066 -
Glsi05g1044 648 ProSitePatterns Zinc finger RING-type signature. 358 367 IPR017907 -
Glsi05g1044 648 CDD BRcat_RBR_RNF14 420 471 - -
Glsi05g1044 648 ProSiteProfiles Zinc finger RING-type profile. 341 389 IPR001841 -
Glsi05g1044 648 ProSiteProfiles RWD domain profile. 151 286 IPR006575 GO:0005515
Glsi05g1044 648 Gene3D Ubiquitin Conjugating Enzyme 138 287 IPR016135 -
Glsi05g1044 648 CDD RING-HC_ITT1-like 335 394 - -
Glsi05g1044 648 SMART ring_2 341 388 IPR001841 -
Glsi05g1044 648 SMART ring_2 597 626 IPR001841 -
Glsi05g1044 648 SMART ring_2 429 517 IPR001841 -
Glsi05g1044 648 SUPERFAMILY RING/U-box 589 646 - -
Glsi05g1044 648 MobiDBLite consensus disorder prediction 16 50 - -
Glsi05g1044 648 Pfam RWD domain 147 280 IPR006575 GO:0005515
Glsi05g1044 648 SUPERFAMILY RING/U-box 409 472 - -
Glsi05g1044 648 SUPERFAMILY RING/U-box 336 420 - -
Glsi05g1044 648 Coils Coil 90 110 - -
Glsi05g1044 648 MobiDBLite consensus disorder prediction 1 101 - -
Glsi05g1044 648 SUPERFAMILY RING/U-box 500 556 - -
Glsi05g1044 648 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 192 556 IPR031127 GO:0004842|GO:0016567
Glsi05g1044 648 FunFam RBR-type E3 ubiquitin transferase 482 591 - -
Glsi05g1044 648 Gene3D - 479 589 - -
Glsi05g1044 648 Pfam IBR domain, a half RING-finger domain 503 549 IPR002867 GO:0008270
Glsi05g1044 648 Pfam IBR domain, a half RING-finger domain 409 467 IPR002867 GO:0008270
Glsi05g1044 648 SMART RWD2001b 151 286 IPR006575 GO:0005515
Glsi05g1044 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 424 IPR013083 -
Glsi05g1044 648 MobiDBLite consensus disorder prediction 80 101 - -
Glsi05g1044 648 SMART ibrneu5 409 467 IPR002867 GO:0008270
Glsi05g1044 648 SMART ibrneu5 496 561 IPR002867 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1044 336 569 ARIADNE family AT3G27710 24.793 4.02e-16 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1044 05 60305844 60318559 Glsi05g1044 05 60305844 60318559 ECH