Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1043 ATGGTTTCTAGGTCGTATTCGAACTTGTTAGATCTTACTTCCTGCGACTCTCCAACTTTTGGTCGTGAGAAGAAAAGGCTTCCACGAGTGGCGACTGTTGCTGGAGTACTTTCTGAACTAGATGATGAGAACAACAGTGCTGGCTCAGATGCTCCCTCATCCATCTCTCAAGATAGGATGATTATTGTAGGTAACCAGCTTCCATTACGGGCACACAGAAAAGATAACGGTAAGTGGGACTTCGCCTTGGATGAGGACTCACTTCTTCTACAGCTGAAAGATGGTCTTGGAGATGATGTAGAAGTAATCTATATTGGGTGCCTTAAAGAAGAAATTGATGTAAGTGAGCAAGATGATGTTGCTCAGCACTTGCTTGATACTTTCAAATGTGTGCCCACGTTCCTCCCTCCTGATCTTTTTAGTAAATTCTATCACGGATTCTGCAAACAACATTTATGGCCTTTATTTCATTACATGCTTCCACTGTCACCTGATCTTGGTGGTCGATTTGATCGATCTCTTTGGCAAGCTTATCTTTCTGTGAACAAGATATTTGCAGATAAAGTAATGGAAGTCATTAGCCCTGATGATGACTTTGTGTGGGTTCATGACTACCACTTGATGGTTCTGCCAACATTTTTGAGAAAGAGGTTTAACAGGGCGAGGCTAGGATTCTTCCTCCATAGCCCGTTCCCTTCCTCTGAGATATACCGAACACTTCCGGTTAGGGATGAACTTCTTAGAGCTCTTCTGAACTCTGACCTTATTGGGTTTCATACTTTTGATTATGCAAGGCATTTCCTCTCTTGTTGCAGTAGAATGCTTGGGCTTTCTTATCAATCCAAGCGGGGCTACATAGGTCTTGAGTACTATGGTAGAACTGTTAGTATTAAGATTCTTCCTGTTGGAATTCATATAGGTCAACTTAAATCTGTCATGAATCTTCCGAAGACAGAAAGCACGGTCACAGAATTACGTGACCAGTTCAGAGGTCAAACTGTGATGCTTGGGGTTGATGACATGGATATCTTTAAAGGAATCAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTTACAACATCCGGAAAAGAGGGGCAAAGTTGTTCTTGTCCAAATTGCAAACCCTGCAAGAGGTCGGGGCAAGGATGTACAGGAGGTACAAAGTGAAACTTATGCCACAGTAAAAAGGATAAATGATACATTTGGAAGGACTGGATACACACCTGTGGTCTTGATTGATACACCACTTCAGTTTTATGAGCGAATCGCTTATTATGTGATTGCAGAGTGTTGTCTTGTTACTGCAGTGAGAGATGGGATGAACCTTATACCCTATGAATATATCATATGTAGACAAGGAAATGAGAAGCTAGACGAGATTTTGGGTATAAGTCCATTTTCTCAGAAGAAGAGCATGCTGGTGGTATCTGAGTTCATTGGGTGCTCTCCATCATTAAGTGGGGCAATTCGAGTGAATCCATGGAACATTGATGCTGTTGCTGAAGCTATGGATTCTGCCCTTGTAGTCCCAGAATCTGAAAAACAGATGCGGCATGAGAAGCATTATAGGTATGTTAGTACACATGATGTTGCATATTGGGCACATAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGGGATCATCTCAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGGGTAATTGCTTTAGATCCGAACTTCAGAAAGCTATCAGTTGAGCATATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCAATTCTGTTAGATTATGATGGTACAATGATGCAGCCTGGATCAATTAGTACAACTCCTAGTGCCGAGGCTGTTGGAATCTTGAAAAGCTTATGCAAGGACCCAGAGAATGTTGTTTTCCTTGTTAGTGGGAAGGAGAGAAAGACTCTGACTGATTGGTTTTCTTCATGTGAAAGGCTGGGGATTGCTGCAGAGCATGGTTACTTTTTGAGGGAAAATCATGATGCAGAATGGGAAACTTGTCTTTCTGTTCCAGATTTTGACTGGAAACAGATTGCTGAGCCAGTAATGCAGTTATACATGGAAACAACTGATGGTTCTAACATTGAGGCCAACGAGAGCACTCTTGTTTGGAATTACCAATATGCAGACCGAGATTTTGGTTCATGCCAGGCTAAGGAACTTCTAGATCATCTGGAAAGTGTTCTTGCCAATGAGCCTGTTACTGTTAAAAGTGGTCCACACATTGTAGAAGTCAAACCCCAGGGGTTGAATAAGGGTATTGTAGCAGAACGTCTTCTCTTAACAATGCGAGAAAGGGTAGTACGTCCAGACTTTGTTCTATGCATTGGGGATGACAGATCAGACGAGGACATGTTTGAGGTGATAAAGAGCGCCAGGGCTTCTCTGTCCCCGGTGGCTGATGTGTTTGCTTGTACAGTTGGGCAGAAACCAAGCAAGGCCAAGTATTACTTAGAAGATACGAGTGAGATTTTGAGAATGTTGCAGGGCCTTGCCAATGCTTCAGAGCAGTCTGTTAGAAGCTCATCCCAATCTAATTCTCATTGA 2559 0.4263 MVSRSYSNLLDLTSCDSPTFGREKKRLPRVATVAGVLSELDDENNSAGSDAPSSISQDRMIIVGNQLPLRAHRKDNGKWDFALDEDSLLLQLKDGLGDDVEVIYIGCLKEEIDVSEQDDVAQHLLDTFKCVPTFLPPDLFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLKSVMNLPKTESTVTELRDQFRGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHPEKRGKVVLVQIANPARGRGKDVQEVQSETYATVKRINDTFGRTGYTPVVLIDTPLQFYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDEILGISPFSQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALVVPESEKQMRHEKHYRYVSTHDVAYWAHSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMMQPGSISTTPSAEAVGILKSLCKDPENVVFLVSGKERKTLTDWFSSCERLGIAAEHGYFLRENHDAEWETCLSVPDFDWKQIAEPVMQLYMETTDGSNIEANESTLVWNYQYADRDFGSCQAKELLDHLESVLANEPVTVKSGPHIVEVKPQGLNKGIVAERLLLTMRERVVRPDFVLCIGDDRSDEDMFEVIKSARASLSPVADVFACTVGQKPSKAKYYLEDTSEILRMLQGLANASEQSVRSSSQSNSH 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1043 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Glsi05g1043 852 Gene3D Glycogen Phosphorylase B; 52 310 - -
Glsi05g1043 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Glsi05g1043 852 Gene3D Glycogen Phosphorylase B; 311 527 - -
Glsi05g1043 852 Pfam Glycosyltransferase family 20 59 543 IPR001830 GO:0003824|GO:0005992
Glsi05g1043 852 CDD HAD_TPP 591 827 - -
Glsi05g1043 852 Gene3D - 589 706 IPR023214 -
Glsi05g1043 852 Gene3D - 715 852 IPR023214 -
Glsi05g1043 852 CDD GT20_TPS 59 543 IPR001830 GO:0003824|GO:0005992
Glsi05g1043 852 FunFam Alpha,alpha-trehalose-phosphate synthase 312 527 - -
Glsi05g1043 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 310 - -
Glsi05g1043 852 NCBIfam trehalose-phosphatase 588 836 IPR003337 GO:0003824|GO:0005992
Glsi05g1043 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 837 IPR001830 GO:0003824|GO:0005992
Glsi05g1043 852 SUPERFAMILY HAD-like 590 836 IPR036412 -
Glsi05g1043 852 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 848 - -
Glsi05g1043 852 Pfam Trehalose-phosphatase 593 826 IPR003337 GO:0003824|GO:0005992
Glsi05g1043 852 NCBIfam HAD-IIB family hydrolase 592 794 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1043 Glsi-ChrGlsi05 60295302 60298483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1043 1 851 Trehalose Biosynthesis Gene Families AT4G17770 78.246 0.0 1426