Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1042 ATGAATGATAGGCTTAGTCTTTCTGCCGTGCCGTCTGCCACCGTCGCGGACTCGCCGTATCGAGACTCAGTTCTCCTTCTGGTTGATAGACGCAAACCTCAATTCGCTTTGGTATACAATTATTGTCATTTCTTCTCGTATTCACATTCCGTTGTCGAAATTGATCCACTGATTGAATACTCGAAGCTGCTTATGATGGACAAAGGCCATGCCTGCAGCTTCTTTGGTGTGGCTTCCATTGGTAACTTTTCATGTGCCATCGTTGTTGTCTCCTTGATGTTGGTTCGTATCCTTTACACTACATACTGGAGCAGCAGACCTTTGAGCAGAAGAGCTGTAAAACCTGTTAGTACCCTTATTATTTTAGGATCAGGTGGTCATACGGCTGAGATGCTTAATCTCCTGGCAGTGCTACAAAAAGATTGGTTTACCCCAAGATTCTATATTGCTGCTGCTACTGATAATATGAGTCTTGAAAAAGCTCAGTTGTTGGAGAACTCCCTTGCAGCCGAGAATGGAACCAGGGTTTGCAACACTGCAAAGTTCATGCAGATATATCGGAGTAGGGAAGTTGGTCAATCATATATAACCTCAATTTGGACAACTTTAATTGCCATGGTGCATGCACTGTGGCTAATGATTAAGACTAGACCTCAAGTGATTCTTTGCAATGGACCTGGAACTTGCATTCCCCTCTGTGCAATTGCATTCTTATTAAAGGTACTGGGGATCCGGTGGTCATCAATTTTCTATGTTGAGAGTATTGCAAGAGTGAGAAGACTTTCCTTGAGTGGCCTGCTCCTGTACAAGTTACGGATGGCTGATCAGCTTTTTGTTCAATGGCCTCAGTTGCAAAGAAAATATCCCCGAGCTACCTATGTTGGTCGTCTGATCTTTTCAGGCACTTCTTGTGCTTTCTTTTCCACCAAAGGTTCTTCCTTTTTCATTTTTCAGGCCAAAATGTCAGACCGGGGTACATTCTCCGGCGATGCAAAGGAGACAAAGAAGGAAGGAGAGGGTAAAAGCCAGAAAAAAGTCCCTTTATTAAAGCTTTTCTCCTTTGCTGACTCTTATGATTATGTCCTTATGGCTATCGGATCTATTGGGGCATGCGTTCACGGAGCTTCTGTGCCTGTTTTCTTCATCTTCTTTGGGAAGTTGATAAATATCATAGGCTTGGCTTATCTTTTTCCCAAAGAAGCTTCTCACAAAGTTGCCAAGTATTCGTTGGATTTTGTGTATCTGAGTATAGCAATATTATTTTCATCTTGGACAGAGGTAGCATGTTGGATGCACACTGGGGAACGTCAAACAGCGAAGATGAGAATGGCTTATTTAAGGTCAATGTTGAATCAAGATATAAGTCTATTTGATACTGAAGCCTCAACGGGGGAGGTCATTTCTGCCATTTCCAGCGAAATACTCGTTGTCCAAGATGCACTATCTGAGAAGGCCGGGAACTTCTTGCACTACATAAGCCGATTTATGGCGGGCTTTATTATTGGATTTGTCAGAGTGTGGCAGATCAGTTTAGTGACACTCTCAATTGTTCCGTTGATCGCCCTTGCTGGGGGTCTTTATGCGTATGTGACAATAGGACTTATTGCCAAAGTCCGAAAATCCTACGTCAGGGCTGGTGAAATCGCCGAAGAGGTCATAGGCAATGTTAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTAAAAACATACAAAGCGGCTCTGTTGTATACTTACGAGAATGGTAGAAAAGCAGGTTTAGCAAAAGGTCTGGGACTAGGCTCCATGCACTGCGTCCTATTTCTATCATGGGCCCTGCTTGTTTGGTACACTAGTGTTGTTGTTCACAAGAACATCGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAATGTTGTTATCTCTGGCATTTCACTTGGGCAGGCAGCACCAGATATCTCGGCATTTATCCGAGCTAAGGCAGCAGCCTATCCAATTTTTGAGATGATAGAGAGGGAAACAGTGAGAATGAGCTCAAAAAATGGTCACAAATTAAACAAATTGGATGGTCACATCCAATTTAAAGATGTCTGTTTCAGTTATCCATCTCGTCCTGATATAGCTATCTTCAACAACCTCTGTCTTGACATTCCTTCTGGAAAAATTGTTGCACTTGTGGGAGGAAGTGGGTCTGGAAAGAGCACTGTCATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGACAGATACTATTAGATGGGAATGCTATAAGGGAACTCGATCTTAAATGGCTAAGACGGCAAATTGGACTAGTTAATCAAGAACCTGCACTTTTTACCACAAGCATCAGGGATAACATACTGTATGGAAAGGATGATGCCACTCTTGAAGAACTTAGACGTGCTGTGACGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCAGATAGATTAGAAACTCAGGTTGGTGAGAGAGGAATACAACTATCAGGTGGACAAAAGCAAAGGATTGCAATATCTCGAGCTATTGTGAAGAATCCATCAATCCTTTTATTGGATGAAGCTACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAGGAAGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTCATAGTAGCACACAGGCTTTCTACAGTTAGAAATGCAGATATGATTGCTGTTGTTGAGGGAGGGAGAATTGTGGAAACTGGTAGCCATGAGGAGCTCATTTCTAACCCAAATAGTGTATATGCATCTCTAGTTCAACTACAGGATGCTGCTTCTTTGCAACGCCACCCCTCCGTGGGTCCTAACCCTACCTTGGCACGGCCTCCAAGCATAAGGTACTCAAGAGAATTATCTCGTACAACAACAAGCTTTGGCGGTAGTTTTCGGTCAGATAAAGAATCTTCTGGCCGTGTTTGTGCTGATGAAGTGGAAAGTGTTGGCAAGTCAAGACATGTTTCTGCAAGAAGACTGTATTCGATGGTTAGACCAGACTGGGGTTATGGGGTTTTTGGCACCTTTTGTGCATTTATTGCAGGAGCCCAGATGCCACTTTTTGCTCTTGGAATCGCTCATGCTCTTGTATCATATTATATGGACTGGGATACAACATGCCACGAGATCAGAAAAATCGCTTTTCTCTTCTGTGGGGCATCAGTTGTATCTGTAATTGTCCATGCCAGTGTGCATCTTTCTTTCGGAATCATGGGCGAGCGACTTACTCTTCGCGTGCGAGAAATGATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATAATACAAACAACACAAGTTCTATGCTATCGTCACGTTTAGAGACAGATGCAACTTTATTACGAACTATAGTGGTTGATCGGTCTACAATTCTCTTACAGAATGTTGGTCTGGTGGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGGATAACACTCGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGCCACATCAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACAGCATATCTAAAAGCCAACATGCTGGCTGGGGAAGCTGTGAGTAACATACGTACTGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTAGAACTTTATGCTAATGAGCTCGTTGAGCCTTCCAAGCTTTCATTTAAACGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTCATTTTCTCATCCTATGGCCTTGCCTTGTGGTATGGTTCTGTTTTGATGGGCAAGGAGCTTGCTAGCTTTAAATCAGTCATGAAGTCATTTATGGTTCTTATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTGGCCCCAGACCTTTTGAAAGGGAACCAAATGGTTGCGTCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAGTAATGGGCGATGCTGGAGAAGAGCTAAAGACAGTAGAGGGAACAATAGAGCTAAATGGTGTCCATTTCAGTTACCCTTCTAGACCAGATGTGGTGATTTTTAAAGATTTTAATCTAATAGTGCCTTCAGGCAAGAGTATTGCTTTAGTTGGGCAAAGTGGTTCTGGTAAAAGCTCTGTCATCTCCCTCATACTCAGATTTTACGATCCAACTTCTGGGAAGGTGATGATTGATGGCAAAGACATAAGGAGACTGAATCTGAAATCTCTTAGGAAACATATTGGTCTTGTGCAACAAGAACCAGCACTATTTGCAACATCAATTTATGAAAACATTCTTTATGGAAAGGAAGGAGCCTCAGATTCAGAAGTAATCGAAGCAGCCAAGCTTGCCAATGCTCATACCTTCATCAGTGCTCTTCCGGAGGGTTACTGCACCAAAGTGGGTGAGCGAGGAGTCCAACTCTCTGGTGGGCAGAGACAAAGGGTGGCCATAGCCAGAGCCGTTTTAAAGAACCCAGAAATCTTACTACTAGATGAAGCCACTAGCGCATTGGATGTGGAATCGGAGCGTGTGGTGCAGCAAGCTCTGGACAGACTGATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTATCCACTATAAGAAATGCAGATCAAATTTCAGTTTTGCAGGACGGGAAGATCATAGAGCAGGGGACTCATTCGACACTTATAGAGAACAGAAACGGAGCATATTTTAAATTAGTCAACCTTCAACAACACCAGCGACAATAA 4704 0.4313 MNDRLSLSAVPSATVADSPYRDSVLLLVDRRKPQFALVYNYCHFFSYSHSVVEIDPLIEYSKLLMMDKGHACSFFGVASIGNFSCAIVVVSLMLVRILYTTYWSSRPLSRRAVKPVSTLIILGSGGHTAEMLNLLAVLQKDWFTPRFYIAAATDNMSLEKAQLLENSLAAENGTRVCNTAKFMQIYRSREVGQSYITSIWTTLIAMVHALWLMIKTRPQVILCNGPGTCIPLCAIAFLLKVLGIRWSSIFYVESIARVRRLSLSGLLLYKLRMADQLFVQWPQLQRKYPRATYVGRLIFSGTSCAFFSTKGSSFFIFQAKMSDRGTFSGDAKETKKEGEGKSQKKVPLLKLFSFADSYDYVLMAIGSIGACVHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQTAKMRMAYLRSMLNQDISLFDTEASTGEVISAISSEILVVQDALSEKAGNFLHYISRFMAGFIIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVKTYKAALLYTYENGRKAGLAKGLGLGSMHCVLFLSWALLVWYTSVVVHKNIANGGESFTTMLNVVISGISLGQAAPDISAFIRAKAAAYPIFEMIERETVRMSSKNGHKLNKLDGHIQFKDVCFSYPSRPDIAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDGNAIRELDLKWLRRQIGLVNQEPALFTTSIRDNILYGKDDATLEELRRAVTLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTVRNADMIAVVEGGRIVETGSHEELISNPNSVYASLVQLQDAASLQRHPSVGPNPTLARPPSIRYSRELSRTTTSFGGSFRSDKESSGRVCADEVESVGKSRHVSARRLYSMVRPDWGYGVFGTFCAFIAGAQMPLFALGIAHALVSYYMDWDTTCHEIRKIAFLFCGASVVSVIVHASVHLSFGIMGERLTLRVREMMFSAILKNEIGWFDNTNNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSTAYLKANMLAGEAVSNIRTVAAFCSEEKVLELYANELVEPSKLSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGVMGDAGEELKTVEGTIELNGVHFSYPSRPDVVIFKDFNLIVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGKVMIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHTFISALPEGYCTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSTLIENRNGAYFKLVNLQQHQRQ 1567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1042 1567 FunFam ABC transporter B family member 2 1125 1321 - -
Glsi05g1042 1567 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 118 298 - -
Glsi05g1042 1567 PANTHER ABC TRANSPORTER B FAMILY 331 925 IPR039421 -
Glsi05g1042 1567 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1005 1291 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g1042 1567 Pfam Oligosaccharide biosynthesis protein Alg14 like 119 297 IPR013969 GO:0006488
Glsi05g1042 1567 SUPERFAMILY ABC transporter transmembrane region 991 1305 IPR036640 GO:0005524|GO:0016020
Glsi05g1042 1567 Pfam ABC transporter 1343 1491 IPR003439 GO:0005524
Glsi05g1042 1567 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1324 1560 IPR003439 GO:0005524
Glsi05g1042 1567 Gene3D ABC transporter type 1, transmembrane domain 350 927 IPR036640 GO:0005524|GO:0016020
Glsi05g1042 1567 Pfam ABC transporter transmembrane region 365 635 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g1042 1567 Pfam ABC transporter transmembrane region 1006 1277 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g1042 1567 CDD ABC_6TM_Pgp_ABCB1_D2_like 994 1307 - -
Glsi05g1042 1567 SMART AAA_5 713 899 IPR003593 GO:0016887
Glsi05g1042 1567 SMART AAA_5 1351 1537 IPR003593 GO:0016887
Glsi05g1042 1567 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 364 652 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g1042 1567 Pfam ABC transporter 705 853 IPR003439 GO:0005524
Glsi05g1042 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 924 IPR027417 -
Glsi05g1042 1567 Gene3D - 1314 1563 IPR027417 -
Glsi05g1042 1567 Gene3D - 676 925 IPR027417 -
Glsi05g1042 1567 ProSitePatterns ABC transporters family signature. 1463 1477 IPR017871 GO:0005524|GO:0016887
Glsi05g1042 1567 ProSitePatterns ABC transporters family signature. 825 839 IPR017871 GO:0005524|GO:0016887
Glsi05g1042 1567 FunFam ABC transporter B family member 1 676 925 - -
Glsi05g1042 1567 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 686 922 IPR003439 GO:0005524
Glsi05g1042 1567 FunFam ABC transporter B family member 4 1314 1567 - -
Glsi05g1042 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1317 1562 IPR027417 -
Glsi05g1042 1567 CDD ABC_6TM_Pgp_ABCB1_D1_like 363 660 - -
Glsi05g1042 1567 SUPERFAMILY ABC transporter transmembrane region 345 657 IPR036640 GO:0005524|GO:0016020
Glsi05g1042 1567 CDD ABC_MTABC3_MDL1_MDL2 1324 1562 - -
Glsi05g1042 1567 Gene3D Glycogen Phosphorylase B; 119 305 - -
Glsi05g1042 1567 Gene3D ABC transporter type 1, transmembrane domain 1123 1564 IPR036640 GO:0005524|GO:0016020
Glsi05g1042 1567 CDD ABC_MTABC3_MDL1_MDL2 686 924 - -
Glsi05g1042 1567 FunFam ABC transporter B family member 1 350 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1042 Glsi-ChrGlsi05 60280980 60295094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1042 344 1563 Calmodulin-binding Proteins AT2G36910 50.121 0.0 1205