Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1041 ATGGGTAGGCCACCATGTTGTGACGAGAGTGGCGTAAAGAAAGGACCATGGACACCAGAAGAAGATCAGAAGCTAATGGATCATATCAGCAAACATGGGCATGGAAGTTGGAGAACTCTTCCAAAGCATGCAGGTTTGAATAGGTGGTCAAAGATTGCAACCCATCTTCCAGGTAGAACTGATAATGAAATCAAGAACTTCTGGAATACCCACATAAGGAAGAAGCTCCTTCATATGGGAATTGACCCAGAAACTCACAAGCCAAGGACTGACTTCAATCAACTCGCGAATCTTTCTCAGTTGCTCGGCATGTCGAATAGCTTGGGAAATTCCGCGAGTCCATGGGGCAATAACCCTCTTGGTCTACAAATAGATGTCACTAGTCAGTTAACCAAAATCCAGCTATTGCAAAATATACTACAAATTGTTAATATGAACCCTTACATGTTAGGCAATCACAGCCTGAACCCACTTCAACTCGAAGCAGTTGTGAACAATGGGACAATCCCCAGCATCCACAACAAGGAGGCTTTCTTGAGAGGTCAAGAATATGCGAACCCCGGCTTAGTCCCTCAAGCACAAAGTGAGGGTATTTCAAAAGTATGGACAGATCACGTAGAAGGTGGATCTAGTTTAGAGGGTTCATGTTTCAACAATCAAAACCAGCCAGAAATGGCACTTCCTGCATTGGTTTCACCCTCTGGCACTGTCAACCAAATGGAGAGCGGCTGTAAAACAGCTCAAGCGTCCACCACCGAGTCACCTTCCTCCTCCATCTTCGAGGCTTGGGAGAAGCTGCTGGACGACGAAACAAGTGGTTCCGACTGGAAGGACATTCTAGAATTGTCATCAACTTTGGCGTCACCAATTTCGTGGTAG 879 0.4573 MGRPPCCDESGVKKGPWTPEEDQKLMDHISKHGHGSWRTLPKHAGLNRWSKIATHLPGRTDNEIKNFWNTHIRKKLLHMGIDPETHKPRTDFNQLANLSQLLGMSNSLGNSASPWGNNPLGLQIDVTSQLTKIQLLQNILQIVNMNPYMLGNHSLNPLQLEAVVNNGTIPSIHNKEAFLRGQEYANPGLVPQAQSEGISKVWTDHVEGGSSLEGSCFNNQNQPEMALPALVSPSGTVNQMESGCKTAQASTTESPSSSIFEAWEKLLDDETSGSDWKDILELSSTLASPISW 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1041 292 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
Glsi05g1041 292 CDD SANT 16 72 IPR001005 -
Glsi05g1041 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Glsi05g1041 292 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Glsi05g1041 292 SMART sant 13 74 IPR001005 -
Glsi05g1041 292 Gene3D - 12 77 - -
Glsi05g1041 292 SUPERFAMILY Homeodomain-like 3 83 IPR009057 -
Glsi05g1041 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 47 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1041 Glsi-ChrGlsi05 60270753 60272204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1041 1 281 MYB Transcription Factor Family AT5G16770 36.095 6.34e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi05g1041 Myb_DNA-binding 6.3e-15 CL0123