Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1037 ATGGGTAAAAGGAAACCCAGGGAGCCAGAGGAAACCCCCAAAAGCGACGGTATTTCAGCTTCTTCGAACATTTTTGACAAGCTATTTGGCAACGCATCGGAACAGAGCGCCAATTCTTCTCTATTCTCAGATAATAATCCCTTTCGTAGGAAGCCTCTAGAACCCGGTTCAAGTTTCGGCTCAATCAATAATACTGAAAAACCGATTGACGGAGGCTCCGAGAACCATGATTCTGGTGAGCAGAAGAAGAGGAAGAAGAGCAAAGACAAGAAGCCTTCTGTTATTTCAGATAATATCCTTGAAGCTTCGGGGAAGAAGTCAGAACTGGTTTCCGATTTAAGCCCTCATTTGGGTCAACCGAATAGAATTCCGCAAGATGACGAGACTGAAGACTCTGGTTTGGGTGCGCAGGCGACTGCATTGTCGAAGAAACAGAATTTCATGTCAAAGGAAGGTGATGGGAAAGGCCTCAATTCGAATTTACAATCGATTAAAAAGGGCGAGCTTGTTAAAGAGGACAAGGAAAAGAGGAAGAAGAGAAAAAGGGATGAAGTTGAGAAAGTGTGGGAAGCCAAGAAGTATGGTGAAGTGGAGGAAGAGGCAGATGAAGGGGAAGGCTTGGGAAATAAAATTGTTGGGAGCAAAAGGAAGACGGTGGATAATCCAGCCGACATGTTAGTTACTAATGAAGGCTTTGATGATGAGAATAAGCTCTTAAGAACCATATTTGTAGGGAATCTACCGCTCAAGGTGAAAAAGAAGACTTTATTGAAGGAGTTTAAGAAATTTGGAGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTGGATACCAAAAAACCTAGAAAGGGAGCTATTCTTTCAAAGAAAATCAATGATTCTGCTGATAGTGTTCATGCGTACATTGTTTTTAAAACAGAGCAGTCTGCTCAGGCTTCTTTGTCCCATAACATGACTGTGGTAGAAGGAAATCACATTCGTGTTGATAGAGCATGCCCACCCCGCAAGAAGCATAAAGGAGAAAATACCCCAATTTATGATAACAAGAGAACTGTTTTTGTGGGCAACCTTCCATTTGATGTAAAGGATGAAGAGCTATATAAACTATTTTCTAGTATGCCCAACCTGGAATCCAGTATAGAAGCTGTTAGAGTCATTAGAGATCCTCATAATAATATTGGAAAGGGTATTGCTTATTTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTTGTTAAGAAACGGAACTTAAAGCTACGAGACCGAGAGCTGAGACTCTCTTATGCCAGAGCAGATGCCATCCCTTCCAAAAGGCCAAACATGTCACCAGAAAATGGTACTCCTGCCAAGAAGTTGGCCATGGATTCAAGGTCTCCTTCAAGCAGTCATAACGGGGCAAATAGAAAATCCAGTATGTCTTACCAGGGTTTGCGTGCAACCAAAACTGGTGTCCAGAAGAAATTTAAAACTCTTGGAGGAGAGCAACCAACAGAGCGCAAGCAGAAAAGACCATCAGTTGCAGCCAGAAAGCTTAAATCGAAATTTCTCAAGGATGGTGGTCCGGCAAAACAAGCAGGGATAAAACGCAAGCTTGACAGTCGAACCCCAGATAGCTCTCAAAGAAATAAGAAAGTTAAGAAGAGTAGGTAG 1653 0.4217 MGKRKPREPEETPKSDGISASSNIFDKLFGNASEQSANSSLFSDNNPFRRKPLEPGSSFGSINNTEKPIDGGSENHDSGEQKKRKKSKDKKPSVISDNILEASGKKSELVSDLSPHLGQPNRIPQDDETEDSGLGAQATALSKKQNFMSKEGDGKGLNSNLQSIKKGELVKEDKEKRKKRKRDEVEKVWEAKKYGEVEEEADEGEGLGNKIVGSKRKTVDNPADMLVTNEGFDDENKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDSADSVHAYIVFKTEQSAQASLSHNMTVVEGNHIRVDRACPPRKKHKGENTPIYDNKRTVFVGNLPFDVKDEELYKLFSSMPNLESSIEAVRVIRDPHNNIGKGIAYLLFKTREAANFVVKKRNLKLRDRELRLSYARADAIPSKRPNMSPENGTPAKKLAMDSRSPSSSHNGANRKSSMSYQGLRATKTGVQKKFKTLGGEQPTERKQKRPSVAARKLKSKFLKDGGPAKQAGIKRKLDSRTPDSSQRNKKVKKSR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1037 550 Gene3D - 236 338 IPR012677 -
Glsi05g1037 550 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 332 490 - -
Glsi05g1037 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 334 IPR000504 GO:0003723
Glsi05g1037 550 MobiDBLite consensus disorder prediction 455 481 - -
Glsi05g1037 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 425 IPR000504 GO:0003723
Glsi05g1037 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 284 IPR000504 GO:0003723
Glsi05g1037 550 SUPERFAMILY RNA-binding domain, RBD 234 341 IPR035979 GO:0003676
Glsi05g1037 550 MobiDBLite consensus disorder prediction 135 164 - -
Glsi05g1037 550 MobiDBLite consensus disorder prediction 435 550 - -
Glsi05g1037 550 SUPERFAMILY RNA-binding domain, RBD 346 444 IPR035979 GO:0003676
Glsi05g1037 550 Gene3D - 339 487 IPR012677 -
Glsi05g1037 550 MobiDBLite consensus disorder prediction 1 164 - -
Glsi05g1037 550 CDD RRM2_RBM34 352 428 IPR034221 -
Glsi05g1037 550 SMART rrm1_1 352 428 IPR000504 GO:0003723
Glsi05g1037 550 SMART rrm1_1 241 330 IPR000504 GO:0003723
Glsi05g1037 550 MobiDBLite consensus disorder prediction 512 544 - -
Glsi05g1037 550 MobiDBLite consensus disorder prediction 15 46 - -
Glsi05g1037 550 CDD RRM1_RBM34 240 330 - -
Glsi05g1037 550 MobiDBLite consensus disorder prediction 70 95 - -
Glsi05g1037 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 432 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1037 242 431 Eukaryotic Initiation Factors Gene Family AT1G22760 26.289 4.08e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1037 05 60245183 60249487 Glsi05g1037 05 60245183 60249487 ECH