Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1033 ATGGATTATGGTCGAGATGGAAACGTTGTTCAAATAATCGCTGGGGGTGGAAATGAAAATTGGCCCGCTGACCAGGCCGTTTGGGCAACGGAAGATGATTACAGATTCTGGAACAATGGCGATGCCGACACTCCCTCGAACTCGAATTACGATCAAAGGCAGTCTCAATCACGCTCGGGAAGCGAGCCCCCCAACAAGAAATCAAGGAATTCGCAGGATGTAACTTCGTCCAATCGATCAAAGGCAATTGGGAAGATGTTTTTCAAGACAAAACTTTGTTGCAAATTTCGGGCCGGGACGTGCCCTTATATCACGAACTGCAATTTTGCTCACAGTATCGAAGAGCTTCGTCGGCCACCTCCGAATTGGCAAGAAATCGTGGCTGCCCACGAAGAAGAAAAATCCATAATGTCAGAACCAAGGGAGGAATTCCAGATTCCATCGATAGTGTCGTCGGGGTTTTCAGGGGAGATGCAGAGGGCGTATAAAGGTCGGCATTGCAAGAAGTTTTACACGGAAGAAGGGTGCCCATATGGAGATAATTGTACATTTCTTCATGATGAGCAATCCAGGAACAGGGAGAGTGTCGCTATAAGTTTAGGCCCTGGTGGGTATGGAGGGGCTGGGAGTGGAACCAATTCCAAGCCATCAAATTGGAAAACAAGAATTTGCAATAAGTGGGAGACGACTGGATATTGTCCATTTGGAAATAAATGCCATTTTGCTCATGGTAATGCAGAATTGCACCGATATGGTGGGGGGCCTGTGGAGACAGAAAATAGAGACACTGCTTCTGCTGCCGCACCTGACACAAAGCAGGGAGGCGTACCTTCAAAAACTCCTGCTGATAATGTGGTTGCATCAGTTATTCCAGTTGCTCATTCTGATGTCTATCTTATCGGAGTTCCTTCACAAAGGTCTTCTATTGTGATTCAGAGGCCAGGTCAGAGAACTCATCAGAAGTGGAAGGGTCCTGACAAAATCAGTAGGATATATGGTGATTGGATTGAGGACACGGAATAA 1023 0.4663 MDYGRDGNVVQIIAGGGNENWPADQAVWATEDDYRFWNNGDADTPSNSNYDQRQSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKSIMSEPREEFQIPSIVSSGFSGEMQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGAGSGTNSKPSNWKTRICNKWETTGYCPFGNKCHFAHGNAELHRYGGGPVETENRDTASAAAPDTKQGGVPSKTPADNVVASVIPVAHSDVYLIGVPSQRSSIVIQRPGQRTHQKWKGPDKISRIYGDWIEDTE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1033 340 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Glsi05g1033 340 MobiDBLite consensus disorder prediction 40 78 - -
Glsi05g1033 340 FunFam Zinc finger CCCH domain-containing protein 213 250 - -
Glsi05g1033 340 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Glsi05g1033 340 MobiDBLite consensus disorder prediction 36 78 - -
Glsi05g1033 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Glsi05g1033 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872
Glsi05g1033 340 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Glsi05g1033 340 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Glsi05g1033 340 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Glsi05g1033 340 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Glsi05g1033 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 210 258 IPR045877 GO:0003729
Glsi05g1033 340 MobiDBLite consensus disorder prediction 252 280 - -
Glsi05g1033 340 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Glsi05g1033 340 SUPERFAMILY CCCH zinc finger 216 249 IPR036855 GO:0046872
Glsi05g1033 340 Gene3D - 211 250 - -
Glsi05g1033 340 Gene3D - 82 118 - -
Glsi05g1033 340 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Glsi05g1033 340 Gene3D - 155 201 - -
Glsi05g1033 340 FunFam Zinc finger, CCCH-type 155 193 - -
Glsi05g1033 340 SUPERFAMILY CCCH zinc finger 161 189 IPR036855 GO:0046872
Glsi05g1033 340 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1033 Glsi-ChrGlsi05 60217789 60222030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1033 220 248 C3H Transcription Factor Family AT1G68200 62.069 3.89e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi05g1033 zf-CCCH 1.2e-10 CL0537