Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1030 ATGGCTCTGGAAACTCTTTCATCAAATGAGCTTTTCAACTTCATTATCTATGATACTATCTCTGCTACTCCATTTAGCAACCATGACTCCTCAGAGCCTACTTTCTTACTAGAAAACAGAGTGAAACCTCAGGAACCTAGCCCTGCATTCAATAACTATTCAGTAAGGACCCGAAAACGCCAATCTTCTGAACCTGAAACTATTGATCGGAGCCAGAATCTTGGCGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAGAACAAGGAAGAGGCTGAGACACAAAGAATGACCCACATTGCAGTAGAACGTAACCGCCGGAAGCAAATGAATGAGCATCTTGCGGTTTTGCGTTCTCTCATGCCCGAATCCTACGTCCAAAGGGGTGACCAGGCATCTATAGTAGGAGGTGCTATAGAATTTGTGAAGGAGCTTGAGCACCTCTTGCAGTCACTTGAAGCTCAAAAGTTGCAGCTTCTACAACAAGAAGTGGCACAATCGAATGAAGACACAGTCATTTTGAAACTCATGAGACCCCCTTTTGCACAATTCTTTGTGTATCCTCAGTTCACATGGTCTCAGGCTCCTAACAAATATACATCCAAGGCTAAGGCTGCCATAGCCGATATAGAAGTAACTTTGACAGAAACACATGCGAACCTTCGAATTCTCTCACGGAGAAGCCCCAGGCAGTTATCAAAGTTGGTTGCTGGTCTTCAAGCCCTCTACCTCCCTATCCTACATCTCAATGTCACCACCATGGACCCATTGGTGCTCTATTCTATCAGTGCCAAGGTTGAAGAAGGATGCCAACTTGGTTCGGTAGATGACATTGCAACTGCAGTTCACCAGTTACTTAGAAGAATTGAGGAGGAAGCTTCCCTTTGCTGTTGA 903 0.4518 MALETLSSNELFNFIIYDTISATPFSNHDSSEPTFLLENRVKPQEPSPAFNNYSVRTRKRQSSEPETIDRSQNLGVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKLQLLQQEVAQSNEDTVILKLMRPPFAQFFVYPQFTWSQAPNKYTSKAKAAIADIEVTLTETHANLRILSRRSPRQLSKLVAGLQALYLPILHLNVTTMDPLVLYSISAKVEEGCQLGSVDDIATAVHQLLRRIEEEASLCC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1030 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 165 IPR036638 GO:0046983
Glsi05g1030 300 Coils Coil 145 165 - -
Glsi05g1030 300 PANTHER MAX DIMERIZATION, MAD 44 297 - -
Glsi05g1030 300 Gene3D - 89 166 IPR036638 GO:0046983
Glsi05g1030 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Glsi05g1030 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Glsi05g1030 300 MobiDBLite consensus disorder prediction 41 96 - -
Glsi05g1030 300 CDD bHLH_AtFAMA_like 100 159 - -
Glsi05g1030 300 SMART finulus 103 154 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1030 Glsi-ChrGlsi05 60204808 60206233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1030 89 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.692 8.57e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1030 HLH 1.1e-10 No_clan