Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1029 ATGGCGTCATTTGGAAACCCAAGAACTTGGGTTCCATATACGACCAGCAAAGACTGTTCTCAAGGCTATTGTAGCGCGCACTGCCCACAATGGTGTTATATAGTCTATCCTCCTCCTCCTCCTTCCTTTGAATTTCCTGAAGACGATTCAAGCCCAAATTTCTCCCCTCTTGTTATCGCAATCATTGGGATCTTGGCCAGTGCTTTTCTTCTGGTGAGTTACTATACTTTCTTATCCAAGTACTGTGGCAACAGAGAATCTGCTCCCAGAGTGAACAATGACCCAAATGATGAAATGGAAGACAATCACAACCCTTCTCTCCATGAGCCCTGGCATGTCTCAACCACTGGCATAGATGAGGCTCTGATAAAGTCCATTACAGTTTGTAAGTACAAGAAAGGAGATGGGCTGGTTGAAGTCACAGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAAAGTGTTAGACTCTTGCCTAAATGCAGCCACGCTTTTCACCTTCCATGCATTGACACATGGCTCAGATCTCACTCCAATTGCCCTCTCTGTCGTGCTAATATATTTACCTTCAATGCTTCGGCGCTTCAAGTGCATGCCCCAGTGATAGAAGAAGTTCCTTCAAGAAGTGATACTTCAATGGAAATTCAGAATGCAAATGAAAATGTTGCAGTTGGAAGAGACAATGAAACGGGTGCTGCGGAAGAAGTGGTCATGAATGGTCGTGCTGGTCCAAAGCCGGCATTACGTGCTTTTAGCGATCTGAGTAATTTTCAGTTAAGGGATAGAATAATAGACATTAGAGATGAAGGGGATGAATCCATCAGAAGGTCAGTCTCTATGGATCATTCATTTCAAAGTGGGGTTTCAGTTGCTGATATTCTGCATATGATTCATCATGATCTTGCTCAAGTAGAAGAATCCTCTACGGAAGCTGGTTCATCAAAGAGATTTTCACAAGGAGAAAGTAGCAGCAAGTCTAGCTACAGAAGAAGGATCTTGCATTGTGTTTTGAGTCCAATCTCAATGAAGAGATCATTTTCTAGTGGAAGATTCTCACTTAACAGAAATGGCAGAGGAAGGCAGGGGATTATCCCTGTCTGA 1104 0.4321 MASFGNPRTWVPYTTSKDCSQGYCSAHCPQWCYIVYPPPPPSFEFPEDDSSPNFSPLVIAIIGILASAFLLVSYYTFLSKYCGNRESAPRVNNDPNDEMEDNHNPSLHEPWHVSTTGIDEALIKSITVCKYKKGDGLVEVTDCSVCLSEFQEDESVRLLPKCSHAFHLPCIDTWLRSHSNCPLCRANIFTFNASALQVHAPVIEEVPSRSDTSMEIQNANENVAVGRDNETGAAEEVVMNGRAGPKPALRAFSDLSNFQLRDRIIDIRDEGDESIRRSVSMDHSFQSGVSVADILHMIHHDLAQVEESSTEAGSSKRFSQGESSSKSSYRRRILHCVLSPISMKRSFSSGRFSLNRNGRGRQGIIPV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1029 367 CDD RING-H2_EL5-like 142 185 - -
Glsi05g1029 367 MobiDBLite consensus disorder prediction 305 324 - -
Glsi05g1029 367 FunFam RING-H2 finger protein ATL54 118 191 - -
Glsi05g1029 367 SUPERFAMILY RING/U-box 123 191 - -
Glsi05g1029 367 Pfam Ring finger domain 142 185 IPR001841 -
Glsi05g1029 367 SMART ring_2 143 184 IPR001841 -
Glsi05g1029 367 MobiDBLite consensus disorder prediction 307 324 - -
Glsi05g1029 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Glsi05g1029 367 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Glsi05g1029 367 PANTHER RING-H2 FINGER PROTEIN ATL16 41 327 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1029 Glsi-ChrGlsi05 60199420 60200523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1029 1 322 C3H Transcription Factor Family AT3G03550 43.363 4.76e-74 232