Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1028 ATGGCGACTTTAGAATCGGCTCTCACAGTCTTCGCAGCTTTCCGTTGTTCTAGTCATTACTGTTTATCCACCAAACCGTTTGGCTCTGTAAAGTTCAATGTTTCCAGTTCTCTATTTCCCCTTTCCCACAGTTCCGTCTTCTCTCCCACGCTCTCGAGCACAAGGCTTTGCTTCGAATTATGCTCTGCTCTGCAAGAGGTAGCAATAGAAGAAAATCCAGAGCAAACCCAGGAAACCAACGTCAAGAAGAAGCTTTACGTGTTTAATTTACCATGGTCCCTCTCGGTGGTGGACATCAAGAACCTCTTTGGTCAATGCGGGACTGTAACCGACGTCGAGATAATAAAAAGCAAAAATGGGAGGAGCAGAGGCTTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTATTGATAAATTTGACTCTCATGAAATATCTGGTCGGATAATAAGGGTGGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCAAGTCCTCCAAGTCCCCCTGCCGGTGAGACACGCTATAAAATTTATGCTTCCAATCTTGCGTGGAAAGTAAGATCTACCCATCTCAGAGAATTTTTCACAGAGAATTTCAAAAATCCAGTTTCAGCCAGGGTTGTCTTTGATAGTCCTTCTGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTGTGACAAAGGATGAAGCAGAGGCTGCCATTTCTACTTTGGATGGGAAGGAATTAATGGGACGACCACTTCGCCTAAAATTCAGCCGAAATACCGTTGAAGAAGCTGGAAATGAAAAAGTGGAAGAGCAAGGTTATGATGATCAAATGGAAGAATCATAG 843 0.4448 MATLESALTVFAAFRCSSHYCLSTKPFGSVKFNVSSSLFPLSHSSVFSPTLSSTRLCFELCSALQEVAIEENPEQTQETNVKKKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKSKNGRSRGFAFVTMASGEEAQAAIDKFDSHEISGRIIRVELAKRFKKPPPPSPPSPPAGETRYKIYASNLAWKVRSTHLREFFTENFKNPVSARVVFDSPSGRSAGYGFVSFVTKDEAEAAISTLDGKELMGRPLRLKFSRNTVEEAGNEKVEEQGYDDQMEES 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1028 280 Gene3D - 164 274 IPR012677 -
Glsi05g1028 280 Gene3D - 63 163 IPR012677 -
Glsi05g1028 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723
Glsi05g1028 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Glsi05g1028 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 252 IPR000504 GO:0003723
Glsi05g1028 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 153 IPR000504 GO:0003723
Glsi05g1028 280 SMART rrm1_1 180 254 IPR000504 GO:0003723
Glsi05g1028 280 SMART rrm1_1 84 156 IPR000504 GO:0003723
Glsi05g1028 280 SUPERFAMILY RNA-binding domain, RBD 164 259 IPR035979 GO:0003676
Glsi05g1028 280 PANTHER OS02G0815200 PROTEIN 63 259 - -
Glsi05g1028 280 SUPERFAMILY RNA-binding domain, RBD 75 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1028 Glsi-ChrGlsi05 60194747 60197122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1028 85 263 Eukaryotic Initiation Factors Gene Family AT4G34110 25.510 1.45e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1028 05 60194747 60197122 Glsi05g1028 05 60194747 60197122 ECH