Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1017 ATGGCGTCCGAAAGCTTAGCCGACAAGAACACTGTATTTAGAAAACTCAAGGCAAAGTCCGAAAATAAGATGTGTTTCGATTGCAATGCTAAGAATCCAACTTGGGCGTCAGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCGGCCGTTCATCGCAGCCTTGGGGTGCATATCAGCTTTGTGAGATCTACGAATTTAGACTCATGGACTCCTGAGCAACTGAGAATAATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGAAAAATAGAGGCCAAGTATACATCCAGAGCTGCAGATTTGTATAGACAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGTAGAGGAGGCAGGTTTACCATCATCACCTGCTGCTTCTCAGTCTGCACAAGTGGCTAATGGACTTCCTGATGTCAAGACCAATGAATTACCAAAAGAAAATGTTTCCGTGAAGCCAGAAATGCCTGAGAGCACTGCTTCGCCTAAAGCTTCTCATACAATAGTTTCCAGTACTGTCAAGAAACCTATTGGTACCAAAAAAGCTGGCAAGACTGGGGGCCTCGGTGCCCGGAAGCTTACTACAAAGCCAAGCGAGTCTCTTTATGAGCAGAAGCCTGAAGAACCACCTGCTCCAGTTTCTTCCTCGACAAGCAACTCTATGGCAGCTGGGCCATCCTTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAATTCTGGAGGTGCACATGTTCTTAGTCATGTGTCTCCACCGAAGTCAACGAGCTTTTTTGCAGATTTTGGGATGGATGGTGGCTTCCCAAAGAGATCTGGGTCTAATTCCTCAAGAGTGCAAATTCAGGAATCTGATGAAGCGAGAAAGAAGTTCTCAAATGCTAAATCTATATCATCAGCCCAATATTTTGGAGATCAGAACAAAGCTGCAGATGTGGACACTCAAGTTACTTTGTCAAAGTTCTCAGGCTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTAACTCAGCAGATAATTCCTCCATTGATGTTACTGCAAGTGACCTCCTCAATCGACTATCTTTCCAGGCACAACAGGATATCTCTTCTCTCAAAAACATTGCAGGAGAGACTGGGAAGAAGCTCAGTTCCTTGGCGTCCACTTTGATGACAGATCTTCAGGACAGAATCCTCTAA 1218 0.4442 MASESLADKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRIMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMVEEAGLPSSPAASQSAQVANGLPDVKTNELPKENVSVKPEMPESTASPKASHTIVSSTVKKPIGTKKAGKTGGLGARKLTTKPSESLYEQKPEEPPAPVSSSTSNSMAAGPSLTSRFEYVENVQSSELNSGGAHVLSHVSPPKSTSFFADFGMDGGFPKRSGSNSSRVQIQESDEARKKFSNAKSISSAQYFGDQNKAADVDTQVTLSKFSGSTAISSADLFGNSADNSSIDVTASDLLNRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1017 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 126 IPR037278 -
Glsi05g1017 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Glsi05g1017 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Glsi05g1017 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Glsi05g1017 405 MobiDBLite consensus disorder prediction 133 147 - -
Glsi05g1017 405 MobiDBLite consensus disorder prediction 221 235 - -
Glsi05g1017 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 405 - -
Glsi05g1017 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Glsi05g1017 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Glsi05g1017 405 Pfam Putative GTPase activating protein for Arf 11 100 IPR001164 GO:0005096
Glsi05g1017 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Glsi05g1017 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Glsi05g1017 405 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Glsi05g1017 405 MobiDBLite consensus disorder prediction 171 185 - -
Glsi05g1017 405 MobiDBLite consensus disorder prediction 132 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1017 Glsi-ChrGlsi05 60140934 60146022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1017 7 91 C2H2 Transcription Factor Family AT3G07940 44.186 4.01e-19 84.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1017 05 60140934 60146022 Glsi05g1017 05 60140934 60146022 ECH