Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1016 ATGACGGAGTATAGGTTGCCGCCGACGATGAATCTCTGGACCGACGACAACTCCTCCGTCATGGAAGCTTTCATGAGCTCCGATCTATCTGCCCTCTGGCCTCCTCCGCCGCAGCCCCAGTCCTCTGCTTCGACCACCACTCCTGGACCTGACCCCACCAAAGTTCCATCTCAATCTCAGCCCCCCGTTTCTCTCTTCAATCAGGAGACCCTCCAGCAGCGCCTCCAGGCTCTCATTGAGGGTGCTAGGGAGAGCTGGACCTACGCTATCTTCTGGCAGTCCTCCTATGATTACTCCGGACCCTCCATGTTGGGCTGGGGCGATGGCTACTATAAAGGGGAGGAAGACAAAGGGAAAGGGAAGGCTAAAACCTTGTCGTCCGCTACCGAGCAGGAGCACCGTAAGAAGGTTCTTCGTGAGCTTAATTCGCTCATTTCTGGGTCATCTGCCCCTATCGACGACGCCGTGGACGAAGAAGTCACCGACACAGAGTGGTTCTTTCTCGTTTCGATGACTCAAGCGTTTGTGAGCGGTGAGGGACTGCCAGGTCAGGCGTTCTACAATTCGAGCCCTGTGTGGGTCACCGGTGCGGACCGGTTATCGACTTCCACTTGCGAAAGGGCGAGGCAGGGGCAGGTATTTGGGCTTCAGACCTTGGTTTGCATACCATCGGCCAATGGGGTGGTCGAGTTGGGTTCCACTGAGCCGATTTACCAGAACTCTGATCTGATGAACAAAGTGAGGGTTTTGTTCAATTTCAACGGCCCGGAAGCCGGTTCGTGGCCCTTGGCTGCTACTACCGATCAAGGTGAGAACGATCCCTCTTCACTTTGGATCAATGATCCATCTAGTGGTATTGAAATTAGAGATTCGGCGAATACTACTGTTCCGAGCTCAAATAATAGTCTTAACATTCAGACAGTCACCAAGCCGATGCAGTTCGAAACCCCAGGTTCTAGTACTTTAACTGAAGGCCCAAGTACCATTCATATCCCGAACACTCACTACAGCCACCAGCAACGGCAACAGACACAGCAATCACAGAACCACGGTTTCTTTTCTAGGGAATTAAACTTTTCGGAGTATGGGTTTGACGCAAATGGTCTCAAGAACGGCAACTCGAATTCCTTAAAGCCCGAATCGGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGCTCTTTTGGTGGAAATGGGAATTTATTTTCAGGTCAGAATCAATTCGTCGCCGAGGACAACAAGAAGAGGAGGTCCCCTACTTCCAGGGGTAGTAATGACGAAGGGATGCTTTCCTTCACTTCTGGTGTGATTTTGCCCCCTTCTAATATGAAGTCTAGTGGCGGCGGCGGCGGCGGCGATTCTGACCACTCGGATCTTGAAGCTTCTGTGGTGAAGGAAGCAGATAGTAGCAGAGTGGTAGAGCCAGAAAAAAAGCCACGGAAAAGAGGGAGAAAGCCAGCAAATGGTAGAGAGGAGCCTTTGAATCACGTTGAAGCGGAGAGGCAGAGGAGGGAGAAGCTCAACCAGAGGTTCTACGCGCTTCGTGCGGTGGTTCCAAATGTATCAAAAATGGACAAAGCATCGCTTCTGGGTGACGCCATATCTTACATTAACGAACTCAAGTCGAAGCTTCAGAGTTTAGAATCAGACAAAGACGATTTGCAGAAGCAATTGGATTCAGTCAAGAAGGAACTAGAGCTGGCCAGTGAAGATTCGCGTTGTCCAGGTTCAGGGGCACCTCCATCAGATAAAGAACAGAAGACTACCAATCCCCAAGGAAGCAAGCTAATCGATTTAGATATCGACGTGAAGATTATCGGTTGGGATGCAATGATTAGGATCCAATGTAGCAAGAAGAACCACCCTGCAGCAAGGTTGATGGCAGCTCTGAAGGAGCTAGACCTGGATGTGCATCACGCAAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAGGCAACAGTGAAGATGGGAAGCCGATTTTACACGCAGGAGCAGCTCCGGTTAGCACTATCCTCCAAGGTTGGCGATGTCCGATAG 2040 0.5069 MTEYRLPPTMNLWTDDNSSVMEAFMSSDLSALWPPPPQPQSSASTTTPGPDPTKVPSQSQPPVSLFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGPSMLGWGDGYYKGEEDKGKGKAKTLSSATEQEHRKKVLRELNSLISGSSAPIDDAVDEEVTDTEWFFLVSMTQAFVSGEGLPGQAFYNSSPVWVTGADRLSTSTCERARQGQVFGLQTLVCIPSANGVVELGSTEPIYQNSDLMNKVRVLFNFNGPEAGSWPLAATTDQGENDPSSLWINDPSSGIEIRDSANTTVPSSNNSLNIQTVTKPMQFETPGSSTLTEGPSTIHIPNTHYSHQQRQQTQQSQNHGFFSRELNFSEYGFDANGLKNGNSNSLKPESGEILNFGESKRSSFGGNGNLFSGQNQFVAEDNKKRRSPTSRGSNDEGMLSFTSGVILPPSNMKSSGGGGGGDSDHSDLEASVVKEADSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQSLESDKDDLQKQLDSVKKELELASEDSRCPGSGAPPSDKEQKTTNPQGSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSSKVGDVR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1016 679 MobiDBLite consensus disorder prediction 44 62 - -
Glsi05g1016 679 SMART finulus 497 546 IPR011598 GO:0046983
Glsi05g1016 679 CDD bHLH_AtAIB_like 488 564 - -
Glsi05g1016 679 Gene3D - 483 571 IPR036638 GO:0046983
Glsi05g1016 679 MobiDBLite consensus disorder prediction 458 501 - -
Glsi05g1016 679 MobiDBLite consensus disorder prediction 423 441 - -
Glsi05g1016 679 MobiDBLite consensus disorder prediction 396 501 - -
Glsi05g1016 679 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Glsi05g1016 679 MobiDBLite consensus disorder prediction 25 62 - -
Glsi05g1016 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 494 561 IPR036638 GO:0046983
Glsi05g1016 679 Pfam Helix-loop-helix DNA-binding domain 495 540 IPR011598 GO:0046983
Glsi05g1016 679 Coils Coil 537 571 - -
Glsi05g1016 679 FunFam Transcription factor bHLH13 484 558 - -
Glsi05g1016 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 491 540 IPR011598 GO:0046983
Glsi05g1016 679 PANTHER MYC 44 674 IPR045084 GO:0003700|GO:0006355
Glsi05g1016 679 MobiDBLite consensus disorder prediction 566 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1016 Glsi-ChrGlsi05 60127052 60129091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1016 1 676 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.287 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g1016 bHLH-MYC_N 7.6e-57 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1016 05 60127052 60129091 Glsi05g1016 05 60127052 60129091 ECH