Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1001 ATGATTGTATATTGGAATCTGATGTCTCCATTAGTGCTTGTTGCTGAGGAGGAAGGGCAGAGCAATATCTCAACAGTAGCATCTTCATCCTTGGATTCTATCTCCCAGAATGGCGCTGAATTAAAAGAACGCAATTACCTAGGATTGTCAGATTGCTCATCAGTTGACAGTTCTAATGTCCCAAGCATGTCAGATGACAAAAAGGACAACCTTAATTTGAAGGCCACAGAGTTGAGGTTGGGTCTTCCTGGATCCGAATCTCCTGAGAGGGATTCAGATCTTTATGTATTGAGCTCAACAAAACGCGATGAGAAGCCACTGTTTCTCTTGCTTCCTACAAAGGATGGAATCTCCTCATCATCCCATAAAACTGTGGTTTCAGGCAACAAAAGAGGTTTCTCTGACACCATGGATGGGTTCCCTGAGGGGAAATTTTCTGGTAATTCAAGGATAAATATAATGCTATCACCTAGACCTTCGGGTGCCCAGCCAACCATAATGAAAGAAATGCCAACCAAGGTTTTACAGGAACGGCCTTGTTCAGCTAACGTAAACGGTCATAACCATACAGGTGCTTCTGCTAGTGGCAGTGCACCAGTTGCTAAGTCCCAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAGAACTCATTGGCCACCACTTCAAAGAACAATGACGAAGTAGATGGAAAACCAGGTCCTTCTGCTCTGTTTGTGAAGGTTAGCATGGATGGTGCTCCCTATCTAAGGAAGGTAGATCTAAGAAGTTATACAACATACCAAGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACTTTAGGTCAGTGTGGCTCTCATGGAGCTCCAGGCAGAGAAATGTTGAGTGAGAGCAAGTTGAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGAAACATGCAAGAGGCTGAAAATCATGAAGAGTTCTGATGCCATTGGCTTGGCTCCCAGGGCCATGGAGAAATCGAAGAGAAGGAGCTAG 1074 0.4413 MIVYWNLMSPLVLVAEEEGQSNISTVASSSLDSISQNGAELKERNYLGLSDCSSVDSSNVPSMSDDKKDNLNLKATELRLGLPGSESPERDSDLYVLSSTKRDEKPLFLLLPTKDGISSSSHKTVVSGNKRGFSDTMDGFPEGKFSGNSRINIMLSPRPSGAQPTIMKEMPTKVLQERPCSANVNGHNHTGASASGSAPVAKSQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPSALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLKIMKSSDAIGLAPRAMEKSKRRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1001 357 MobiDBLite consensus disorder prediction 119 141 - -
Glsi05g1001 357 Pfam AUX/IAA family 76 348 IPR033389 -
Glsi05g1001 357 SUPERFAMILY CAD & PB1 domains 235 338 - -
Glsi05g1001 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 344 IPR003311 GO:0005634|GO:0006355
Glsi05g1001 357 Gene3D - 234 350 - -
Glsi05g1001 357 FunFam Auxin-responsive protein 232 349 - -
Glsi05g1001 357 ProSiteProfiles PB1 domain profile. 237 339 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1001 Glsi-ChrGlsi05 60025242 60029012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1001 251 339 B3 DNA Binding Superfamily AT1G19220 32.584 1.03e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi05g1001 AUX_IAA 6.4e-91 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1001 05 60025242 60029012 Glsi05g1001 05 60025242 60029012 ECH