Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0997 ATGGAGCTTACTCAACTTGGTTTTCTGGAGGAATTACTTGCTCCAAGAAGAGACACTTGGAGCACTTTTTCCACTGGGTTTAGCGAGCTATTCCCTAATGCTTGGAGCTTTGACTCTTTTGATGGGAGCCCAGATTTAGCTTCCTTAAATCCCCCATTTGCTGCATTTTCCACTCCTATAGACCATAGATTTGAGTACACTAGTAGTGAAGCAGGATACCCATTTGTTGACGGGTTCTCAGTGCCAGAGCTTGACTCATCCTACACCAGGAATGACGACTCGGCACCATTTCCAGCACAAGAAGATAAACCATCCACGGAGGACGAAGAGCTTGCCTTTCTGGGCAGTGAAAATCAGACTCGAACTGGCTGCAAAATTGAGGAACAAGCTACAACAGAAGTTCCAGTCTTCAACATGGGTTTGTGTGGAGAGAAAAAACCAAAATTCAAGAAGCTGGAAGGGCAGCCATCGAAGAATCTCATGGCAGAAAGAAGGCGAAGAAAGCGCCTCAACGACCGCCTTTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACCATAGATTATATGAAAGAGCTTCTAGAAAAGATCAGTAAGTTGCAAGAAGAAAGAACAGAAGAGGATACAAATCAGATAAAGCTCTTGGGTGTTTCCAAGGAGCTTAAGCCAAATGAAGTAATGGTAAGAAATACCCCCAAGTTTGATGTTGAGAGGAGGGACCAGGACACAAAAATAAGTATCTGCTGTGCCCCTAGGAGTGGATTGTTACTGTCAACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATTAGTAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTTGCTGAGCAGAGAGCCAGTATTAGCTCTGACGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTTTCTGTCAGATATCTGATCTAACACTGTGTGGGAGGCAAGGTTGCATAATTATTGAAAATTATCCTTTTCGTATTCATGATGAGGCGCTAGAAAGGAAAATCTACAGTTTGATGCCTTCTAAAGTGCCACTGCTAATGCAAGAAAACTGGAAAAGTACCAGGCCTGATTTTAGTTGCAAGTACATCAATAATGGTGGATTAGTGAATTGA 1179 0.4275 MELTQLGFLEELLAPRRDTWSTFSTGFSELFPNAWSFDSFDGSPDLASLNPPFAAFSTPIDHRFEYTSSEAGYPFVDGFSVPELDSSYTRNDDSAPFPAQEDKPSTEDEELAFLGSENQTRTGCKIEEQATTEVPVFNMGLCGEKKPKFKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISKLQEERTEEDTNQIKLLGVSKELKPNEVMVRNTPKFDVERRDQDTKISICCAPRSGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRASISSDEIKQALFRNAGYGFCQISDLTLCGRQGCIIIENYPFRIHDEALERKIYSLMPSKVPLLMQENWKSTRPDFSCKYINNGGLVN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0997 392 MobiDBLite consensus disorder prediction 87 108 - -
Glsi05g0997 392 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 72 321 - -
Glsi05g0997 392 Pfam Helix-loop-helix DNA-binding domain 160 203 IPR011598 GO:0046983
Glsi05g0997 392 Coils Coil 200 220 - -
Glsi05g0997 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Glsi05g0997 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 216 IPR036638 GO:0046983
Glsi05g0997 392 Gene3D - 149 219 IPR036638 GO:0046983
Glsi05g0997 392 SMART finulus 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0997 Glsi-ChrGlsi05 59992975 59995158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0997 93 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.187 1.52e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0997 HLH 8.9e-10 No_clan