Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0987 ATGGGAAGAGGGAAGATTGTAATCCGAAGAATCGACAATTCTACCAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGGTTGATCAAGAAAGCTAAAGAGCTAGCAATCCTGTGTGATGCAGAAGTTGGACTAGTGATATTCTCCAGCACAGGAAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAGTGATTGAGAGATATAACGCATGCAAGGAGGAACATCAACAATTGAATCCAGAATCGGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATATTAAGGCAGCAACTACAGAATCTGCAAGAAAACCACCGGCAATTGATGGGAGAACAGCTTTATGGTTTAAGCGTGAAAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGATGAAATCCGAGAGCTGAATCGAAAGGGAAACATTATCCATCACGAAAATGTGGAACTCTATAAGAAGGTAAACCTCATTCGACAAGAAAACATGCAACTATACAAGAAGGTTTATGGCACAACAGATGTGGCTGCAGCGAGCAGAGATGCATTCAATCCATATGGATTTCATGCAGGAGAGGATCCACAAGCACTGATCCAACTACAGTTAAGCCAGCCTGAGCAAGAAGCGTATGAGACATCAGGCAGTGCCACAAAATGA 699 0.4235 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEYASTSMKSVIERYNACKEEHQQLNPESEVKFWQREAEILRQQLQNLQENHRQLMGEQLYGLSVKNLQDLENQLEMSLQGVRMKKEQILTDEIRELNRKGNIIHHENVELYKKVNLIRQENMQLYKKVYGTTDVAAASRDAFNPYGFHAGEDPQALIQLQLSQPEQEAYETSGSATK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0987 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi05g0987 232 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0987 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi05g0987 232 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0987 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Glsi05g0987 232 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Glsi05g0987 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0987 232 Coils Coil 122 142 - -
Glsi05g0987 232 Coils Coil 85 112 - -
Glsi05g0987 232 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0987 Glsi-ChrGlsi05 59912854 59920200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0987 1 230 MADS-box Gene Family AT2G22630 64.681 8.78e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g0987 K-box 8.6e-26 No_clan