Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0981 ATGACTCTGCAGCTCTGCTTCTTGCTCGGTAGTTGTTGTTCTGGGACGACCTCAGATAGCCAATATTCTTTGAAAGTTAATTATTATCTCATTGACACGCGTGATGACGTAATAAACACTCCAAATGGCAGAAGAGCTCTAAGGAAGATCAGCAATCCACAACCATCATCTTCTCCTCCTGCAGTCAAGCTGGACGTTGAAAATCGTAAGCAGGTTGTGATAGATAATGGACTTGTCAGCGTCACTCTATCAAGGCCCGAGGGCTATGTTATCGGAATATCGTACAATGGAATTGACAATGTACTTGGAGCTCACAACGCAAACGATAATAGAGGGTATTTAGACGTCGTTTGGAACAAACCAGAACAACGCGGTACCTTTCAGAGAATTGACGGGACAAATTTTACAGTTATAGAAGAGAACGAAAATCAAGTGGAAGTTTCATTTTTAAGAACATGGACATCTTCCATGAAAGGATCGAGTGTCCCTATAAACATAGACAAAAGGTATATAATGCGAAGAGGCGATTCCGGATATTACTCCTACGCAATATTTGAGCGCTCAGAAGGATTTCCAGCAGTGGAGGTTGATCAAATTAGGATTGTTTACAAGCTCCGACAGGACAGGTTCGACTATATGGCTATATCAGACAGGAGGCAAAGGATCATGCCAACAGATAAAGATAGAGATACTGGGAAGCCCCTGGCTTATCCTGAAGCTGTTCTCTTAACCCACCCTGAGAACCCAGAAATTAGAGGAGAGGTGGATGACAAATATATGTACTCGTCTAATAACGAAGACAACTCTGTTCATGGCTGGATTAGCTCCGATTCTGAAGCACCCATTGGCTTCTGGATGATAACGCCAAGTAATGAGTTTCGGAATGCTGGCCCCATCAAGCAAGACCTCACCTCTCATGTTGGCCCCACCACCCTCTCTATGTTTGTGAGCACCCACTATACTGGGAAGGATGTAGCAATGCAATTTGAAGAAGGGGAGACATATAAGAAGGTTTTTGGCCCCGTATTTGTCTACCTTAACTCTGCTTCAAGCCAAAAGGATTCAAAAACGCTCTGGTCTGATGCTGTTCAACGGTTCAATAAGGAAGTCGGAAGCTGGCCTTACGATTTCCCTCGTTCTCAAGATTTCATTCTACGCAATCGACGAGGAACTGTAGCTGGACAATTACTAGTCCAAGATTGGTACAGCAAGGGATGGGCAACTCTAAATGCTACGTTTGCTTATGTTGGTCTAGCTCTGCCTGGAGAAAAGGGATCATGGCAAACAGAGAGCAAGGGTTATCAATTCTGGACTCGAGCCGACCGGAGAGGGTCCTTCGCTATAAAAAATGTTGTACCAGGGGACTACAATTTGTATGCCTGGGTTCCTGGCACTATTGGTGATTACAAGTATAATGCTACAATCACCATTAAACCAGGAGGTTTCATCCAATTGGGTTCACTTGTATATAGGCCTCCAAGAAATGGCCCTACGCTTTGGGAAATTGGTGTCCCAGATCGCTCATCTGGAGAGTTCTACATACCAGACCCATATCCTACGCTCATGAACAAATTATACCAGCAAGACCCAAGAGACAAGTTTAGGCAATACGGGTTATGGGAACGTTACACTGATTTATATCCAGAAGATGATCTCGTTTACAATGTTGGCCTCGATAAGTATAACAAGGATTGGTTTTTTGCTCATGTTACCAGAAGCATAGGAAACGGGACATACAAACCAACAACTTGGCAAATTAAATTTGAACTTGAAGACGAAAAATTGATGGGAAATTACACACTTCAAGTGGCGTTGGCATCAGCCACTGATTCTAACTTGCAGGTTTGGTTCAATGACCCAAGCAGTGTTAATCCCCACTTCGCGACGGGGAGAATAGGCAGAGACAATGCAATAGCAAGGCATGGCATCCACGGGTTGTATAGGCTCTTCAGTATTAACGTAGCAAGTGATCGATTTTCAAAGGGAACGAACACTATCTATCTGAAGCAGTCAAGAGCCACGAACTCCTTCCAAGGTGTTCTGTATGACTATATCCGTTTAGAACGACCTCCAAACCCCAAGGATTTGACACATTAA 2097 0.4378 MTLQLCFLLGSCCSGTTSDSQYSLKVNYYLIDTRDDVINTPNGRRALRKISNPQPSSSPPAVKLDVENRKQVVIDNGLVSVTLSRPEGYVIGISYNGIDNVLGAHNANDNRGYLDVVWNKPEQRGTFQRIDGTNFTVIEENENQVEVSFLRTWTSSMKGSSVPINIDKRYIMRRGDSGYYSYAIFERSEGFPAVEVDQIRIVYKLRQDRFDYMAISDRRQRIMPTDKDRDTGKPLAYPEAVLLTHPENPEIRGEVDDKYMYSSNNEDNSVHGWISSDSEAPIGFWMITPSNEFRNAGPIKQDLTSHVGPTTLSMFVSTHYTGKDVAMQFEEGETYKKVFGPVFVYLNSASSQKDSKTLWSDAVQRFNKEVGSWPYDFPRSQDFILRNRRGTVAGQLLVQDWYSKGWATLNATFAYVGLALPGEKGSWQTESKGYQFWTRADRRGSFAIKNVVPGDYNLYAWVPGTIGDYKYNATITIKPGGFIQLGSLVYRPPRNGPTLWEIGVPDRSSGEFYIPDPYPTLMNKLYQQDPRDKFRQYGLWERYTDLYPEDDLVYNVGLDKYNKDWFFAHVTRSIGNGTYKPTTWQIKFELEDEKLMGNYTLQVALASATDSNLQVWFNDPSSVNPHFATGRIGRDNAIARHGIHGLYRLFSINVASDRFSKGTNTIYLKQSRATNSFQGVLYDYIRLERPPNPKDLTH 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0981 698 SUPERFAMILY Galactose-binding domain-like 495 688 IPR008979 -
Glsi05g0981 698 Gene3D - 496 688 - -
Glsi05g0981 698 CDD RGL4_N 71 355 - -
Glsi05g0981 698 SUPERFAMILY Starch-binding domain-like 387 486 IPR013784 GO:0030246
Glsi05g0981 698 Gene3D - 386 484 - -
Glsi05g0981 698 Pfam Polysaccharide lyase family 4, domain II 413 481 IPR029413 -
Glsi05g0981 698 SUPERFAMILY Galactose mutarotase-like 67 352 IPR011013 GO:0003824|GO:0005975|GO:0030246
Glsi05g0981 698 Pfam Rhamnogalacturonate lyase family 58 255 IPR010325 -
Glsi05g0981 698 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 66 691 - -
Glsi05g0981 698 Pfam Polysaccharide lyase family 4, domain III 498 687 IPR029411 -
Glsi05g0981 698 CDD RGL4_C 500 688 - -
Glsi05g0981 698 Gene3D - 65 364 IPR014718 GO:0030246
Glsi05g0981 698 CDD RGL4_M 388 488 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0981 Glsi-ChrGlsi05 59874947 59879619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0981 57 690 Polysaccharide Lyase AT4G37950 58.750 0.0 746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0981 05 59874947 59879619 Glsi09g0936 09 6493397 6499531 CCT