Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0962 ATGGGGGAATCATTAGAGAAGCACGGAAGTGGGTTTTCGTGCGATGATCAGCCTTCCCCAAGAGGAGTACTGGAAATCCCTGTTTCGGGTACAGACTCAGACCAGAGTGTGAGCAGCAGCTGCAGCGCTAGTTCACCGGAGAAGTCATCGGAGGCACGGCGGTCGCTTGCCCGGGAAGGTCATGTGCAGCAATGGAAGGCTATGATAGCAGCCATCAGGAAGAAGTCTGCGCAAAGATTTTCAACGATTCCTTTGCTTGCGGCAAGCTACGATATCTCTAGGAAGAGCTTGAGGAGGAAGCTAGGACGTAATCGAAGCGCAGAAGATGGTATTGATCTTGATGCTATTCCTACGAAGCCCTCTTGGAGGAATTTCGACTACGAAGAGCTCGCAGCTGCCACCGACGATTTCAGTTCCGAGAACTTGGTTGGGCAAGGTGGGCATGCTGAAGTCTACAAAGGCCGCTTACCCGATGGTCAAGTCGTAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGAAAATGAGGATAGAGCGGGTGATTTCTTGTCAGAGCTTGGGATCATTGCGCACATAAACAACCCAAATGCTGCACATTTGGTTGGGTTCGGGGTCAATAATGGTTTCTACTTTGTCCTGCAATACGCCCCGCACGGCAGCCTTGCTTCTCTGCTTTTTGGTTCTGAATGCATGGAGTGGAAGATAAGGTTCAAGGTAGCTATTGGGGTGGCAAAGGGGTTGCGATACCTCCATCATGATTGCCCAAGACGAATCATTCACAGAGACATCAAGGCCTCCAACATTTTACTAAACCAAAATTACGAAGCTGAGATTTCAGATTTTGGACTAGCAAAATGGCTCCCACAGAAGTGGACCCACCATGTCGTCTTCCCAATAGAGGGCACATTCGGGTATTTGGCTCCAGAATATTTTATGCATGGAATTGTGGATGAGAAGACTGACGTATTCGCATTTGGGGTTTTGCTACTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCATGTAGTAGACAAAGTCTTGTAATCTGGGCAAAACCGCTGCTGGACGAGAAAAATATGAAGGAAATAGTAGACCCCAGACTAGGAGAAGCTTATGATACCACTGAAATGATGCGTGCCATGATGACGGCTTCAATGTGTGTCCACCACTTATCCTCCAATCGACCATACATGAATCAGGTTGTGCATCTGCTGAAGGGGGAAGAAGAACCTGATGATATTAAGCAGAAATCAATAGCTCCAAGATCGGTCTTGTTAGACGCCTGTGACCTCGAAGATTATACTTGCTCTAATTACTTGAATGATCTCAATCGTCACAGGCAACTAATCATGGAGTAA 1356 0.4727 MGESLEKHGSGFSCDDQPSPRGVLEIPVSGTDSDQSVSSSCSASSPEKSSEARRSLAREGHVQQWKAMIAAIRKKSAQRFSTIPLLAASYDISRKSLRRKLGRNRSAEDGIDLDAIPTKPSWRNFDYEELAAATDDFSSENLVGQGGHAEVYKGRLPDGQVVAVKRLMKNEKENEDRAGDFLSELGIIAHINNPNAAHLVGFGVNNGFYFVLQYAPHGSLASLLFGSECMEWKIRFKVAIGVAKGLRYLHHDCPRRIIHRDIKASNILLNQNYEAEISDFGLAKWLPQKWTHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSCSRQSLVIWAKPLLDEKNMKEIVDPRLGEAYDTTEMMRAMMTASMCVHHLSSNRPYMNQVVHLLKGEEEPDDIKQKSIAPRSVLLDACDLEDYTCSNYLNDLNRHRQLIME 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0962 451 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 216 418 - -
Glsi05g0962 451 MobiDBLite consensus disorder prediction 1 58 - -
Glsi05g0962 451 Gene3D Transferase(Phosphotransferase) domain 1 216 423 - -
Glsi05g0962 451 SUPERFAMILY Protein kinase-like (PK-like) 118 404 IPR011009 -
Glsi05g0962 451 ProSiteProfiles Protein kinase domain profile. 137 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0962 451 PANTHER OS08G0249100 PROTEIN 16 418 IPR046958 -
Glsi05g0962 451 MobiDBLite consensus disorder prediction 29 50 - -
Glsi05g0962 451 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
Glsi05g0962 451 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 112 214 - -
Glsi05g0962 451 SMART serkin_6 137 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0962 451 Pfam Protein kinase domain 139 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0962 451 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Glsi05g0962 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0962 Glsi-ChrGlsi05 59663288 59666613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0962 93 427 Trihelix Transcription Factor Family AT5G38560 41.429 3.94e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi05g0962 PK_Tyr_Ser-Thr 2.7e-38 CL0016