Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0960 ATGGCTCGGTCTACTAATTGGCTGTCGTTTTCTTTGTCGCCGATGGAAATGCTGAGGTCCTCCGATTCACAGTTCGTTCAATACGACAGCACCTCTGCTGCTACTTCTCAATACTTCGTCGATAACTTCTATGCGAATGGCTGGACAAATCTCAAGTCTCAGGTAGAGTACAACCAAGTAGAGCAAAACCAGAGCAGAGAAAGCCAGGCACAGAGCATGGCGGAATCATCCATTCTCACAGGCTTCATGGACCCACAAACTCACAACCAGCCGGTACCGAAGCTCGAAGACTTCTTCGGGGATTCTACGTCTATGATGCGCTACTCCGATAGCCAAACAGAAACCCAAGATTCGTCCCTCACCCATATATACGAGCAGGGCGGTTCGGCCTACTTCAGCGACCACCAAGATCTGAAAGCAATCGCTGGGTTTCAGGCTTTCTCCACTAACTCGGGCTCCGAGGTGGATGACTCGGTGTCCATGGGCAAAACTCAGGCTACTTGTGGGGAGTTTGCGGCTCAGTCGATTGAGTCGTCTGGGAACGAGGGGGCGTTATCTAGTTGTGCCATGGGTACTTTGTCTCTGGCGGTCACAGAAAGTCGTGAGAAGGCCATGGTTGCAGTGGATTCCAATGGATCAAAGAAGGTCGCCGATACTTTTGGCCAGCGAACTTCGATTTACAGAGGTGTCACCAGACATCGATGGACTGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCGAGGAAAGGACGTCAAGGTGGATATGACAAGGAAGAAAAAGCGGCAAGAGCTTATGATTTGGCAGCTTTAAAGTACTGGGGAACTAACGCTACCACGAACTTTCCCGTTTCCACTTATACAAAGGAATTGGAGGAGATGAAACATGCAACAAAGCAAGAATTTATTGCATCGTTGCGAAGGAAAAGCAGCGGTTTTTCCAGGGGAGCTTCTATATACAGGGGGGTCACAAGGCATCATCAGCAGGGTAGATGGCAAGCAAGAATTGGTCGTGTTGCTGGGAACAAAGATCTATACCTTGGAACATTTGCTACTGAGGAGGAAGCAGCAGAGGCTTACGATATTGCAGCCATTAAATTCAGAGGTGCAAATGCTGTAACGAATTTTGAGATGAGTAGATATGATGTGGAAGCTATTCTGAAGAGTTCTCTTCCCGTTGGCGGATCAGCAAAACGAGCAAAGCTTTCCCCAGAATCAGACCACAATGCTCCTCAGAACAATAATAATCAGCAACACCAGTATTCAAACCTGAGTAGCACTATCAATTTTTCAGCCATTCAACCAGTTGCACCTGTCCCTTGTGGGATCCCCTTTGACTCTGCAGCACCATATTACCACCACAATCTCTTGCACCATTTTCATCCTACCAGCAATATTGGCGCCGCGGAGTTTGCTTTATCTACTACCACTGCAGCATCGTTGACTGCACTTCCGGCAGCGGCAGCAGCTGAGTTCTTTATATGGCCTCCTCAGTCCTATTGA 1521 0.4832 MARSTNWLSFSLSPMEMLRSSDSQFVQYDSTSAATSQYFVDNFYANGWTNLKSQVEYNQVEQNQSRESQAQSMAESSILTGFMDPQTHNQPVPKLEDFFGDSTSMMRYSDSQTETQDSSLTHIYEQGGSAYFSDHQDLKAIAGFQAFSTNSGSEVDDSVSMGKTQATCGEFAAQSIESSGNEGALSSCAMGTLSLAVTESREKAMVAVDSNGSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGTNATTNFPVSTYTKELEEMKHATKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAILKSSLPVGGSAKRAKLSPESDHNAPQNNNNQQHQYSNLSSTINFSAIQPVAPVPCGIPFDSAAPYYHHNLLHHFHPTSNIGAAEFALSTTTAASLTALPAAAAAEFFIWPPQSY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0960 506 Gene3D AP2/ERF domain 325 385 IPR036955 GO:0003700|GO:0006355
Glsi05g0960 506 Gene3D AP2/ERF domain 226 291 IPR036955 GO:0003700|GO:0006355
Glsi05g0960 506 CDD AP2 324 385 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 ProSiteProfiles AP2/ERF domain profile. 325 383 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 SUPERFAMILY DNA-binding domain 324 385 IPR016177 GO:0003677
Glsi05g0960 506 MobiDBLite consensus disorder prediction 403 426 - -
Glsi05g0960 506 CDD AP2 225 291 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 FunFam AP2-like ethylene-responsive transcription factor 324 385 - -
Glsi05g0960 506 MobiDBLite consensus disorder prediction 412 426 - -
Glsi05g0960 506 FunFam AP2-like ethylene-responsive transcription factor ANT 225 291 - -
Glsi05g0960 506 ProSiteProfiles AP2/ERF domain profile. 226 289 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 SMART rav1_2 226 295 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 SMART rav1_2 325 389 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 SUPERFAMILY DNA-binding domain 225 291 IPR016177 GO:0003677
Glsi05g0960 506 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 PRINTS Ethylene responsive element binding protein signature 365 385 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 Pfam AP2 domain 325 375 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 Pfam AP2 domain 226 281 IPR001471 GO:0003700|GO:0006355
Glsi05g0960 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0960 Glsi-ChrGlsi05 59656678 59661319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0960 48 506 AP2-EREBP Transcription Factor Family AT5G10510 55.083 9.30e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi05g0960 AP2 4.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0960 05 59656678 59661319 Glsi09g0967 09 6781839 6787250 CCT