Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0959 ATGGATGCAACCCAAACAGAGAAAATCTATGTTGCTGTTGGCGATGATCTGCGTGATGGAATTAAAACCTTGCATTGGGCTCTCAACAAATGGAAATCTCGTTCCATATCCATAGTCATTCTCTATGCGAGTCACAACATTTCCAAGGATTATGTTTATACCCCGTTTGGGAAACTCCCGGCAAGATCTGTGAGTGATGAGAAACTAGCAATTCACAGAAAATTAGAGCTAGAGAAAATCAACAAGCTGCTTTCCAATTACATAGCTTTCTGTGGGGAGGTGCCAGCTGAGATATTTGAAGTTGAGAAATTTGATGAAGCTATCCAGAAACGCTTTACAGATTTGATTTTTGGTCTGAAAATAACCAAATTGGTTATGGGATTTTCATTAATGAAGCCCTCTTGGAAATCAAGAGGTGCCATTAGCGGATTGTTCCATGTTCATCAGCAGAAGCCTGACTTCTGCGAACTGTTCATCATATGTGGAGGAAAACAAGTTTTCCTGAAAGGACAAAACGATGAGAAAATCATGGAGGACGATAATGGGGCCATGGTTGCCAGAATGAGAGATAAGGGAACCTTCAAAGGTTGGTTTGAGAGAGTGTTCACTGAAAAAAACATGGATTCCCCAGATCATAAAAGCTCTCGTGGATCATCAACTTCAACAAACATGGAATCCCCTGTTTCCCAAAACCAGTGGGAATTCTACCTCCAAGAGATTGATAATTATTTCCAGAATTTGTTGTCTTGTAATTTTGATGAAGAAGGCGCTGGGCAAGACAATGACGTCTCGCAGACAAGTCCAATTGAGCCAGATGTCACAGAAAATAACGATTCCAACACGAGTGCTGCAGAAAAACTAGAGATCCTAAAAAGAAAGCTCAACGAGGCACAGGAGACCATCCAATTGAAGAGGAAAGAAGCCAAAGATAATTTGGATAGACATGCAAAAGCTGAATGGGCTATTTGTTTATGCAACAGACGAGCTGAAGAACTTGAAAGTAAAATAAAGGAAGAAATCACTACTAGAGAAGATTTGATGAAAGAACTGGACGCAGAAAAAGAAAATATATACGAAACCAGAAGGGATGTAGAAGAGAGCAAGAGAAGGCTGAGTTCGCTGGTGGAGCTTCAATCCGAGCTCTCAAACAAGCTTCAGATTTCCAGTGTAGCAAACTCACGAGTTGAAACCCAGCTGGAGAAGGCAGTGAGTGCGAGGTCTGAGATGGTTAGGGAGATAGAGGAGCTGAGGAGACAGAGGGATGTGCTGAATAGAAGGATAGAGTTTTGCAGAGAAAAGGATGCCATAGGAATGGCGGCGAGGCTGACTGAAACGAGTTTCGGTTTCAGGGAGTACTCGGAGGTGGAGATCAGACTCGCCACCGACAACTTTTCCGAGCGTTTGAGGGTGAAATCCGGCGGCGACTGGACCAACGTTTATAGAGGAAGGATCAACCATTCCACTGTAGCAATCAAGATGCTCAATTCGGTTCATGGCTTGTCCCAAGAAGATTTCCAAGCCAAGGTGAGACTTCTCAGTGGCATTCGGCAGCCTCATGTGGTTGCAATGGTTGGCTTCTGCTCTCAGTTAAAATGCATAGTTCTGGAATATATGCACAATGGAAGCTTGCGAGACATGCTGTTTTCCAGGAGAAGAAACCGGGCCTTACGGTGGCATGACCGCATAAGGATAGCGACTGAAATATGCTCGAGTTTGGGCTTTCTTCACGCAGCCAAGCCCGGGCCAATTATTCATGGCCACCTTACTCCATCCAGTGTTCTCTTGGATCGCAATCTCGTTGCGAAGATAAAAGGTTTCGGGCCGAACGAATGCAGTGTTGAATCAGACATACGGGCCATGGGGCTTTTAATGCTGCATCTTCTGACTGGAAGGAATTGGGTGGGTCTGGTTGAGGAGGCGATGACGATGGATAGAGAGGCCTTGGTCCGGGTTCTGGATGAGATGGCTGGACAGTGGCCATTGGATATGGCTCAAAAAATTGTGGGCTTAGCAATGAGGTGCATGGCCATTACCCACAAGCCCAACGCAGAAATTAGTATTGGAAAGGTCATGGAAGAACTGAATGAGATCAGACGAGAGGCTGATGATCTAGTTGGAAGAGGGCAGGGGACAATCATCGGTTGGGGCATAGATAGAGAAGACGATGTGCCCAGTGTTTTCCTGTGTCCCATATTTCAGGAGGTGATGAAAAATCCACACGTGGCGGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAGGAATGGGTACGATCAGGGCATGATTCATCGCCCATGACAAACTTAAGGCTAAAGCACACATTCCTTACCCCTAATCACTCCCTTCGCTCCCTAATTGAGGATTGGCGAAGCAAAAGATCAGCTAAAGCTTCAAATTAA 2400 0.4496 MDATQTEKIYVAVGDDLRDGIKTLHWALNKWKSRSISIVILYASHNISKDYVYTPFGKLPARSVSDEKLAIHRKLELEKINKLLSNYIAFCGEVPAEIFEVEKFDEAIQKRFTDLIFGLKITKLVMGFSLMKPSWKSRGAISGLFHVHQQKPDFCELFIICGGKQVFLKGQNDEKIMEDDNGAMVARMRDKGTFKGWFERVFTEKNMDSPDHKSSRGSSTSTNMESPVSQNQWEFYLQEIDNYFQNLLSCNFDEEGAGQDNDVSQTSPIEPDVTENNDSNTSAAEKLEILKRKLNEAQETIQLKRKEAKDNLDRHAKAEWAICLCNRRAEELESKIKEEITTREDLMKELDAEKENIYETRRDVEESKRRLSSLVELQSELSNKLQISSVANSRVETQLEKAVSARSEMVREIEELRRQRDVLNRRIEFCREKDAIGMAARLTETSFGFREYSEVEIRLATDNFSERLRVKSGGDWTNVYRGRINHSTVAIKMLNSVHGLSQEDFQAKVRLLSGIRQPHVVAMVGFCSQLKCIVLEYMHNGSLRDMLFSRRRNRALRWHDRIRIATEICSSLGFLHAAKPGPIIHGHLTPSSVLLDRNLVAKIKGFGPNECSVESDIRAMGLLMLHLLTGRNWVGLVEEAMTMDREALVRVLDEMAGQWPLDMAQKIVGLAMRCMAITHKPNAEISIGKVMEELNEIRREADDLVGRGQGTIIGWGIDREDDVPSVFLCPIFQEVMKNPHVAADGFSYELEAIEEWVRSGHDSSPMTNLRLKHTFLTPNHSLRSLIEDWRSKRSAKASN 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0959 799 SUPERFAMILY Protein kinase-like (PK-like) 446 678 IPR011009 -
Glsi05g0959 799 MobiDBLite consensus disorder prediction 255 282 - -
Glsi05g0959 799 ProSiteProfiles Protein kinase domain profile. 465 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0959 799 MobiDBLite consensus disorder prediction 258 282 - -
Glsi05g0959 799 Pfam Protein tyrosine and serine/threonine kinase 474 607 IPR001245 GO:0004672|GO:0006468
Glsi05g0959 799 Coils Coil 329 370 - -
Glsi05g0959 799 MobiDBLite consensus disorder prediction 213 227 - -
Glsi05g0959 799 Gene3D Phosphorylase Kinase; domain 1 439 537 - -
Glsi05g0959 799 ProSiteProfiles U-box domain profile. 722 796 IPR003613 GO:0004842|GO:0016567
Glsi05g0959 799 MobiDBLite consensus disorder prediction 207 227 - -
Glsi05g0959 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 798 IPR013083 -
Glsi05g0959 799 Gene3D Transferase(Phosphotransferase) domain 1 538 707 - -
Glsi05g0959 799 SMART Ubox_2 726 789 IPR003613 GO:0004842|GO:0016567
Glsi05g0959 799 CDD RING-Ubox_WDSUB1-like 724 779 - -
Glsi05g0959 799 Coils Coil 280 314 - -
Glsi05g0959 799 Coils Coil 687 707 - -
Glsi05g0959 799 Coils Coil 399 433 - -
Glsi05g0959 799 Pfam U-box domain 723 793 IPR003613 GO:0004842|GO:0016567
Glsi05g0959 799 SUPERFAMILY RING/U-box 720 795 - -
Glsi05g0959 799 PANTHER OS02G0152300 PROTEIN 9 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0959 Glsi-ChrGlsi05 59644474 59649044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0959 3 799 U-box Gene Family AT5G65500 49.939 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi05g0959 PK_Tyr_Ser-Thr 2.9e-20 CL0016