Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0947 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCTACGGCAAGGCAGGTGACGTTCTCGAAGCGACGCAGAGGCCTCTTCAAAAAAGCTGAGGAGCTTTCAGTTCTCTGTGACGCAGATGTTGCTCTCATAATCTTCTCCGCTGCTGGGAAGCTCTTCGAGTACTCCAGCTCAAGCATGAAGGAAATACTCGAAAGGCATCATTTGCACTCTAAGAACATAGCAAAGCTGGATAAACCGTCTGTCGAGTTGCAGCTAGTTGAGGACAGCAACTGCGCCCAATTGAGCCGGGAAGTTGCTGAGAGGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTGCAAGGTTTAAGTCTCGAAGAATTACAACAACTAGAGAGGTCTCTTGAATGTGGTTTGGGCCGTGTAATAGAAAAGAAGGGGGAGAAGATCATGAACGAAATCAGTGATCTCCAAAGAAAGGGAATGCAATTGATGGAAGAGAACGAGCGATTAAAGCGTCAAGTGGCACAAATATCTAATGGCCGAAGGCAAGGTGGTGCTGAGTTCGACAACTTCATCACTGAGGAAGGTCAGTCATCGGAGTCTATCACAATCGCCTCCAACTCCTCTGGGCCTCCTCAAGATGATGATAGCTCTGACACATCACTCAAGTTGGGTAGTCAAAATATAATTGAGAAAGCAGCAATAGCAACATTTCTTCAGATACCTAGTAATAAACTGGATGAGCTTGAAATGGATCCTTTAATATGA 759 0.4598 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSAAGKLFEYSSSSMKEILERHHLHSKNIAKLDKPSVELQLVEDSNCAQLSREVAERSRQLRQMRGEDLQGLSLEELQQLERSLECGLGRVIEKKGEKIMNEISDLQRKGMQLMEENERLKRQVAQISNGRRQGGAEFDNFITEEGQSSESITIASNSSGPPQDDDSSDTSLKLGSQNIIEKAAIATFLQIPSNKLDELEMDPLI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0947 252 MobiDBLite consensus disorder prediction 193 221 - -
Glsi05g0947 252 FunFam Transcription factor, MADS-box 13 83 - -
Glsi05g0947 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Glsi05g0947 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0947 252 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Glsi05g0947 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 Coils Coil 94 114 - -
Glsi05g0947 252 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Glsi05g0947 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi05g0947 252 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0947 252 Coils Coil 150 170 - -
Glsi05g0947 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Glsi05g0947 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0947 Glsi-ChrGlsi05 59589929 59595551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0947 1 222 MADS-box Gene Family AT2G22540 68.511 5.80e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g0947 K-box 1.9e-17 No_clan