Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0935 ATGCGTGCACTCAGGAACGCCCTGATATTGACTCGCAAGGTTTCAGTGTTTGTCATCGGCGTTTGGTTAAGCGCGTGGGCATTTTACTCTTTTCTTTTTGTCATTCGTCTTCGCCTCAAGCCCCTCCTTCTGCTACCACTAACTACTACTGCAGAAATGGAATTTGAGGATCACGAGGAGCAAGAGGAAGAGCTGGGTATGGCGCCCGCAGCTTATGAATCCTTGGGCAACTCGTCCCGGGTCAAAATGCCGAGCTCGGAGGGTGCCGGAGAAGTGATGGTGACTCAGGCTCAGGCACAGGCGGCGAGGAATAATGGTAGAGCAAGGTATAGGGAGTGTTTGAAGAACCACGCGGTGAGTATCGGAGGACACGCGCTCGATGGCTGCGGAGAGTTCATGGCGGCTGGAGTGGAAGGCACACTTGACGCTCTCAAATGCGCCGCTTGTAACTGCCACCGCAATTTCCATCGTAAGGAGACGGACGCGATGGGTTTTGGAGTGGGCGACCCGTATTTATTGACCCACCACCACCACCCCGCCCATTTCTCGGCGTATTATCGATCGCCGGCCGGGTATTTACACGTGGCGGGACAGCAGAGAGGGGCGACGCTGGCGTTGCCATCCACTTCAGGAGGAGGTTGTGGGACCCAGAGCACAAGGGATGATCAAGAGGACGTTTCGAACCCAAGTGCAGGAGGAGAAGGATCGAGGAAGAGGTTCAGGACCAAGTTCACGCCGGAGCAAAAGGACAAAATGCTGGATTTAGCGGAGAGATTGGGTTGGAGGATTCAGAAGCACGACGAGGCGGTGGTGCAGCAGTTCTGTGACGACACTGGTGTGAAGCGTCACGTTCTAAAGGTTTGGATGCATAACAACAAGCACACTCTGGGTAAGAAGCCCTAG 903 0.5471 MRALRNALILTRKVSVFVIGVWLSAWAFYSFLFVIRLRLKPLLLLPLTTTAEMEFEDHEEQEEELGMAPAAYESLGNSSRVKMPSSEGAGEVMVTQAQAQAARNNGRARYRECLKNHAVSIGGHALDGCGEFMAAGVEGTLDALKCAACNCHRNFHRKETDAMGFGVGDPYLLTHHHHPAHFSAYYRSPAGYLHVAGQQRGATLALPSTSGGGCGTQSTRDDQEDVSNPSAGGEGSRKRFRTKFTPEQKDKMLDLAERLGWRIQKHDEAVVQQFCDDTGVKRHVLKVWMHNNKHTLGKKP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0935 300 Pfam ZF-HD protein dimerisation region 108 160 IPR006456 -
Glsi05g0935 300 SUPERFAMILY Homeodomain-like 225 298 IPR009057 -
Glsi05g0935 300 MobiDBLite consensus disorder prediction 204 241 - -
Glsi05g0935 300 MobiDBLite consensus disorder prediction 204 230 - -
Glsi05g0935 300 FunFam Zinc-finger homeodomain protein 2 224 298 - -
Glsi05g0935 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 109 159 IPR006456 -
Glsi05g0935 300 NCBIfam homeobox domain, ZF-HD class 237 293 IPR006455 -
Glsi05g0935 300 Gene3D - 222 297 - -
Glsi05g0935 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 110 159 IPR006456 -
Glsi05g0935 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 89 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0935 Glsi-ChrGlsi05 59496219 59497448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0935 53 296 ZF-HD Transcription Factor Family AT4G24660 48.374 1.14e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi05g0935 ZF-HD_dimer 2.2e-29 No_clan