Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0925 ATGGAAGAAGCACTTAGGCGTCTCAATGGGCTGGCCCCGATACCAGAACCCGAACCGCAGGACTCCCTCTCCGACCACCAGAAGAAAGGCGTAACAGCCTCCAGCAAGAGGACATTGAGAGAAAACGGAGGCTCCGGCGGCACAGTGAGGTACCGTGGAGTCAGGCGTAGGCCATGGGGCCGTTACGCCGCCGAGATAAGGGACCCGCATACTAAGGAGCGCCGCTGGCTAGGTACCTTCGACACGGCTGAGGAAGCCGCTTGTGCTTATGACTTCGCCGCTCGAGCCATGCGTGGCCTTAAAGCTCGCACTAATTTCGTGTACCCAACTTCGCCTCCTTACTCTCCCGCTGAACGTCTCTTGCCTCCCTTCAGCTTTCCCAAACAATCTCAGCCGTCCATTAACAAGAACTCCCAGAATCGCCATTTGGGACCTTCAAACTGGTCTTCTTGCTCTAACCCTCATGCTGGTGACTTCTTAGCTAGTTCTCCAGCAACCCAGCCAACATCTACCCTGAACATGCTTCTTTATCGTGATTTCCTCAACTCTTCTCCTAATCCTTCTTTGATTTCTTCTCCTCGGCCATTTTATGATCATTTATCGTACAAAAATGGCAGCTCTTCCTTGCCTTCGTCCTCGTGTTGTTCCTACTCTTGCTCCTCTTCTTCATCATCCGTTCCCACTTCTAGTTGTCTCCAAGGTTGCTGTTTGGCGAGTTCTTCTGGTGGGTCTCCTTCCATCATGATGAACACCCATCAAAATTATGGTAATGTAAGCACCGATGGAACCAAAAGCACTGAAGCTTTTGATGAATTTGGATTCTCTCCGACAGAACCTTCAGACTCCGGATTGTTGGAGGAGATAGTTCATAGCTTCTTGCCAAAATCGAAGCCCAAGAAGCTTGAGAGCCATCCACCAGAAACTTTGTCCTCACCAGAGGTGCTACCTCACTCGTTTCCTGATCGCATGTTCGTTTCGACCACCCAGTGCTTTAAAGAAAACAAGACGGATTTTACTGAGAAAGACGGTTTTGGTGCCTCTTTCGACCACCAAGGTTTTCCCATGCAGCAGCAATTCGAAAGTTTTAATGGGTTTAACACGGTGCAGGCTATGCCCTTCGGGAACGACCAGTTGATGATGATGAATGATCCCGAGTACTTAATCACGCAAGATATTCTTCATTACCAAGAGCTTCTTAATGCTTTTGCAGCCAGGATGCATAATGCCTAG 1230 0.4943 MEEALRRLNGLAPIPEPEPQDSLSDHQKKGVTASSKRTLRENGGSGGTVRYRGVRRRPWGRYAAEIRDPHTKERRWLGTFDTAEEAACAYDFAARAMRGLKARTNFVYPTSPPYSPAERLLPPFSFPKQSQPSINKNSQNRHLGPSNWSSCSNPHAGDFLASSPATQPTSTLNMLLYRDFLNSSPNPSLISSPRPFYDHLSYKNGSSSLPSSSCCSYSCSSSSSSVPTSSCLQGCCLASSSGGSPSIMMNTHQNYGNVSTDGTKSTEAFDEFGFSPTEPSDSGLLEEIVHSFLPKSKPKKLESHPPETLSSPEVLPHSFPDRMFVSTTQCFKENKTDFTEKDGFGASFDHQGFPMQQQFESFNGFNTVQAMPFGNDQLMMMNDPEYLITQDILHYQELLNAFAARMHNA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0925 409 MobiDBLite consensus disorder prediction 126 145 - -
Glsi05g0925 409 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Glsi05g0925 409 MobiDBLite consensus disorder prediction 1 52 - -
Glsi05g0925 409 MobiDBLite consensus disorder prediction 21 35 - -
Glsi05g0925 409 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Glsi05g0925 409 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 230 - -
Glsi05g0925 409 MobiDBLite consensus disorder prediction 296 315 - -
Glsi05g0925 409 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 MobiDBLite consensus disorder prediction 125 145 - -
Glsi05g0925 409 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Glsi05g0925 409 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0925 Glsi-ChrGlsi05 59426869 59428098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0925 1 109 AP2-EREBP Transcription Factor Family AT1G24590 54.264 1.37e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g0925 AP2 4.4e-11 CL0081