Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0912 ATGGCTCTGCTTATTCCCGGTTATCAACCTCAATTACTGTCATCAATCCGTCATAACCATGAAAATAAGCCTTTGATCAGAGTTTCTCACAAACGCTTCGATTTTGCCGCTAATACTAGACTCCGAATTGTTCTGTCTACTCCTGCTTTCAGTTCCAGGCGCATTCTGGTAAGCCCTCTAAAATCAGCGTCCATAAATGGGGTTTTCGTTCAGGAGGATTTAGAATCCTTGAGAGAAGGTCATAGGGAAGACGAATACAATGTCGAATTTCTAGAGAGGCTTAGGAGATGGGTTGGTTTCCTTCCCTCGATTTTGCCTGGTGGAAGCTGGTGGGACTTCACCGATGACGTCGAGGTTCGGGTTTTGGCTAAACCGGTGACTGTTTGGCGCGCTCTTGGCAAAATGTGGGAACTGGTTGCTCAAGACCGCTGGGTTATTTTTGCGGCATTCTCTGCTCTGATTCTTGCAGCGGTTTCGGAGATTTCCATCCCACATTTTTTAACTGCAACCATCTTCTCCGCACAGGGAGCGGAAATTACAGTTTTCCGTCGGAATGTGCGCCTCTTGGTTCTATTGTGTATAACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGCTTTGGCATCGCGAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACTCTGAAACAGTTGGCGATTTAACAAGCCGGCTTGGGGCAGATTGTCAACAAGTGTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAACTGGCTCATTGATCTACCTGTTGATTTTGTCTTGGCCACTTGGGTTATGTACATTGGTTATATGCTCTATTTTATCGGCAGTTATGCTACTTTATGGAAGGTATCAGAAAAAGGCCGCGAAGTTGATCCAAGAAGTCACTGCTTCTGCAAATGAAGTAGCTCAAGAGACATTCTCTCTCATAAGAACTGTCCGTGTTCATGGAACAGAAGGAGAAGAACTTGGAAGATACAAATGGTGGCTGAGGAAATTAGCTGATATAAGCTTGCGGCAAAGTGCTGCATATGGATTTTGGAATTTTAGTTTCAACACTCTTTATCATTCAACTCAGGTTATTGCCGTGCTATTTGGAGGGATGTCTATTCTAGCGGGTCATATTACAGCAGAGAAACTTACCAAATTTATACTATATAGTGAATGGTTAATTTATTCAACCTGGTGGGTTGGAGACAATATATCCTCTTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTTCATTTGATGGATCTCTTGCCTAGCGGTCAATTCATAGCAAGAGGAGAAAAGTTGCAGAGATTAATGGGGCATATTGAGTTTATTAATGTGTCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTACAAAATGTAAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACGCTGGTAAACCTTTTGCTCTGTCTATATGAGCCAACAAATGGTCAGATTTTGATCGATGGCATCCCTCTTAAAGAATTGGATATCATGTGGTGGAGAGAAAGAATTGGATTTGTGGGACAGGAACCGAAGCTCTTCCGCATGGATATTAGTTCAAACATCAGATATGGATGCACCCGAGGTATTAAACAGGAGGATGTTGAATGGGCTGCCAAGCAGGCCTATGCTCATGACTTTATCTCTGCACTTCCTAATGGTTATAAAACACTTGTTGATAATGATCTGTTAAGTGGAGGACAAAAGCAGCGGATTGCTATAGCAAGGGCCATTCTTAGGGACCCAACAATATTGATCTTTGATGAAGCCACTAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGTTCTATCAGAAGTGACTCCACAACAAAGAGGAGTGTCATAGTCATAGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTAATGGATGGTGGTCAAGTTGTCGAGAATGGAAGTCACAGGGAACTTCTATTAAAAGATGGTTTGTATGCAAGATTGACTAGAAAACAGTCTGATGCAGTGGCATGA 2124 0.4261 MALLIPGYQPQLLSSIRHNHENKPLIRVSHKRFDFAANTRLRIVLSTPAFSSRRILVSPLKSASINGVFVQEDLESLREGHREDEYNVEFLERLRRWVGFLPSILPGGSWWDFTDDVEVRVLAKPVTVWRALGKMWELVAQDRWVIFAAFSALILAAVSEISIPHFLTATIFSAQGAEITVFRRNVRLLVLLCITSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGSLIYLLILSWPLGLCTLVICSILSAVMLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVHGTEGEELGRYKWWLRKLADISLRQSAAYGFWNFSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISSLMQSVGASEKVFHLMDLLPSGQFIARGEKLQRLMGHIEFINVSFHYPSRPTVSVVQNVSFAVHPGEVVAIVGLSGSGKSTLVNLLLCLYEPTNGQILIDGIPLKELDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTRGIKQEDVEWAAKQAYAHDFISALPNGYKTLVDNDLLSGGQKQRIAIARAILRDPTILIFDEATSALDAESEHNVKGVLRSIRSDSTTKRSVIVIAHRLSTIQAADRIVVMDGGQVVENGSHRELLLKDGLYARLTRKQSDAVA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0912 707 Gene3D - 460 703 IPR027417 -
Glsi05g0912 707 Gene3D ABC transporter type 1, transmembrane domain 293 459 IPR036640 GO:0005524|GO:0016020
Glsi05g0912 707 FunFam Multidrug ABC transporter ATP-binding protein 454 706 - -
Glsi05g0912 707 SMART AAA_5 489 684 IPR003593 GO:0016887
Glsi05g0912 707 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 147 428 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g0912 707 Pfam ABC transporter transmembrane region 149 413 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi05g0912 707 PANTHER ABC TRANSPORTER B FAMILY 140 699 IPR039421 -
Glsi05g0912 707 Gene3D ABC transporter type 1, transmembrane domain 118 292 IPR036640 GO:0005524|GO:0016020
Glsi05g0912 707 FunFam ABC transporter B family member 26, chloroplastic 128 447 - -
Glsi05g0912 707 ProSitePatterns ABC transporters family signature. 600 614 IPR017871 GO:0005524|GO:0016887
Glsi05g0912 707 Pfam ABC transporter 481 628 IPR003439 GO:0005524
Glsi05g0912 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 702 IPR027417 -
Glsi05g0912 707 SUPERFAMILY ABC transporter transmembrane region 134 444 IPR036640 GO:0005524|GO:0016020
Glsi05g0912 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 462 701 IPR003439 GO:0005524
Glsi05g0912 707 CDD ABC_6TM_TAP 149 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0912 Glsi-ChrGlsi05 59359656 59366259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0912 217 705 Calmodulin-binding Proteins AT2G36910 33.735 1.75e-68 243