Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0897 ATGACCACAACCATGGCCTCCCTTAATCTCCTTCCTTCCCTTATCCCTCTGCTAGCAAGTTTGTTTCTCAGAGTTTTTCCATTGCAAGTTTCAAGCCAAGAGTCTCATGTAGAACCTTTGAATTGCTCAGCAAGTATTATGACATGCAATGCCTCACTTTACCACATAAGCCACAATCTTAAGAAGGAAGAAATTGCCTATTTTTACTCTGTCAATGTGTCCCAGATCGAACCCATTATGCATAACAAGAAGGAAGATTACCTCGTAACTGTACCTTGTTCTTGCCGAAGTACCGGCGACCTTGGTGGATATTTTTATGAAACAACCTACAAAGTGAAGCCGAACGACACTTTTGACAATATTTCAGCGCTGATTTACAGTGGGCAAGCCTGGCCTCTTGATAACCATGTTTTGGTCCCAAATGAGACTTTAAGAATACCTCTTCCATGTGGGTGTTCAGAAAGTGACTCCCAAATTGTTGTGACCTACACAGTCCAGCAGAATGATACACCCTCAGGGATAGCTAGTCTGCTCTTTGCTACACTGGATAATATGCAGAGCATGAACAGAATTTTGGCTCAAAACCCTTCATTTATAAATGTGGGGCGGGTGCTATTTGTTCCCAAAGAGTTAAAGGGGCTTCAAACCCTCAACCTCAACAGTGACGGTAAAAAGAGTAACAACAAGTGGAAACTAGTCATTGGCGTAACAGCAGGTGTGACATTACTCTCATTGTCCATAATGTTCATTTTCATTCTCAGGAGAAAAACCAACAAAGAAGATCCAAATGGTGCATCTAAGAGATCAGTTGCCAATAGAACTCTTTCCAACCACTTTGGTAAAGATTATATGGAAGAAAGACAAGTAATATTTAGTCTTGAGGAGATTGAAGAGGCTACGAATAACTTTGATGAAACGAGAAGAATTGGAGTTGGTGGATATGGGAGTGTGTATTTTGGAATGTTAGGCGAGAAGGAGGTTGCTATAAAGAAGATGAGGTCTAATAAATCCAAAGAGTTCTATGCAGAACTCAAGATTTTATGTAAGATCAATCACATTAACATCGTGGAGCTACTGGGATATGCCAGTGGAGAAGACCACCTCTATTTGGTGTATGAGTATGTTCTAAATGGATCTCTTTCTGATCATCTTCATGATCCATTACGAAAAGGTTATCAGCCTCTTTCTTGGAATTCTAGAGTACAGATTGCTCTGGATGCTGCAAAAGGTCTAGAATACATACATGATTACACAAAAGCACGATACGTCCACCGTGATATAAAGACTAGCAATATTCTTCTTGATGAGAAGTTCAGAGCAAAGGTAGCAGATTTTGGACTCGCAAAGCTGGTAGAACGGACAAGTGATCAAGATTTTATTTCAACAAGGCTTGTTGGAACACCTGGCTACCTTCCACCAGAATCTATCAAGCAGTTTCAAGTGACCCCAAAAACTGATGTATTTGCATTTGGAGTGGTTCTATCAGAATTGGTAACCGGGAAACATGCACTGTTTTGTGACAACCAGGAGGCCAGTAAAATGAAATCCCTTATTACCGTTGTGAATAAAGTATTTCAAGATGATGACCCAGAGACTGCTTTAGAAGATGTCATAGATAAGAATCTTCAAGGTGGCTATCCTGCAGAGGATGTTTACATGATGGCAGAGCTAGCTGAAAGGTGCTTGCAGGAAGATCCAGTTGAGAGGCCTGAAATGTGGGAGATTGTTGGGGCATTGTCACTGCTTGTTACCTGA 1755 0.4097 MTTTMASLNLLPSLIPLLASLFLRVFPLQVSSQESHVEPLNCSASIMTCNASLYHISHNLKKEEIAYFYSVNVSQIEPIMHNKKEDYLVTVPCSCRSTGDLGGYFYETTYKVKPNDTFDNISALIYSGQAWPLDNHVLVPNETLRIPLPCGCSESDSQIVVTYTVQQNDTPSGIASLLFATLDNMQSMNRILAQNPSFINVGRVLFVPKELKGLQTLNLNSDGKKSNNKWKLVIGVTAGVTLLSLSIMFIFILRRKTNKEDPNGASKRSVANRTLSNHFGKDYMEERQVIFSLEEIEEATNNFDETRRIGVGGYGSVYFGMLGEKEVAIKKMRSNKSKEFYAELKILCKINHINIVELLGYASGEDHLYLVYEYVLNGSLSDHLHDPLRKGYQPLSWNSRVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKFRAKVADFGLAKLVERTSDQDFISTRLVGTPGYLPPESIKQFQVTPKTDVFAFGVVLSELVTGKHALFCDNQEASKMKSLITVVNKVFQDDDPETALEDVIDKNLQGGYPAEDVYMMAELAERCLQEDPVERPEMWEIVGALSLLVT 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0897 584 CDD LysM 161 207 IPR018392 -
Glsi05g0897 584 SUPERFAMILY LysM domain 161 208 IPR036779 -
Glsi05g0897 584 Gene3D LysM domain 161 208 IPR036779 -
Glsi05g0897 584 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Glsi05g0897 584 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Glsi05g0897 584 FunFam PTI1-like tyrosine-protein kinase 3 375 584 - -
Glsi05g0897 584 Gene3D Phosphorylase Kinase; domain 1 281 374 - -
Glsi05g0897 584 SMART LysM_2 162 208 IPR018392 -
Glsi05g0897 584 SMART LysM_2 109 147 IPR018392 -
Glsi05g0897 584 ProSiteProfiles LysM domain profile. 161 207 IPR018392 -
Glsi05g0897 584 Pfam LysM domain 163 208 IPR018392 -
Glsi05g0897 584 Pfam Protein kinase domain 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0897 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Glsi05g0897 584 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 43 581 IPR044812 GO:0019199|GO:0045087
Glsi05g0897 584 Gene3D Transferase(Phosphotransferase) domain 1 376 584 - -
Glsi05g0897 584 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0897 584 SMART serkin_6 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0897 Glsi-ChrGlsi05 59200892 59205443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0897 286 583 Receptor kinase-like Gene Family AT1G51940 49.671 9.65e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi05g0897 Pkinase 1.8e-50 CL0016